PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01566.1.g00260.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 1573aa MW: 168592 Da PI: 8.045

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01566.1.g00260.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.6	3.7e-10	412	462	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqk 46 W t E++ll++av+++G+ +W+++a +++ g+t+ +c++r++ Zmw_sc01566.1.g00260.1.am.mk 412 WGTLEELLLACAVTRHGTSSWDSVAMEVQtrsplaarPGLTPHSCRLRFRH 462 9999********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-4	407	465	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-4	408	466	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.65E-5	409	467	IPR009057	Homeodomain-like
CDD	cd00167	0.00175	412	444	No hit	No description
PROSITE profile	PS50090	6.33	412	464	IPR017877	Myb-like domain
Pfam	PF00249	1.7E-8	412	461	IPR001005	SANT/Myb domain
SuperFamily	SSF47370	6.8E-7	628	743	IPR001487	Bromodomain
Gene3D	G3DSA:1.20.920.10	7.8E-6	665	757	IPR001487	Bromodomain
CDD	cd04369	3.41E-6	667	738	No hit	No description
Gene3D	G3DSA:3.80.10.10	3.1E-50	1025	1321	IPR032675	Leucine-rich repeat domain, L domain-like
SuperFamily	SSF52058	1.59E-43	1025	1325	IPR032675	Leucine-rich repeat domain, L domain-like
Pfam	PF08263	8.2E-8	1027	1059	IPR013210	Leucine-rich repeat-containing N-terminal, plant-type
Pfam	PF00560	0.97	1166	1186	IPR001611	Leucine-rich repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1573 aa Download sequence Send to blast
MKASIKFRDD DRPLLRAKVP VGVLGLPFLS GLAAGGDAKD LRFDLSTAFA SGPALRLSYR 60 PNDPLQPFAV SVRTGLGPLG SPTRAPFALA AEFNVFSSNT PTFSIHVKPR VGDFALVSSV 120 CSPPLLPDPA SAPAPAPLAI KMTDFTTNGD DQGRDAHRTF SFNGNGFAAN VAAAAGKGGG 180 GVGALLSGMQ LMTRSVLPLW SKASLRFQWG LRVPPEIKAA LADDGYGRKA GNLAISKLPL 240 LVMNKITIEQ MPNAGSQPDA DRKKKKDVPR SGEEQEFSLM KRQLEALNAE SAILRRSIEG 300 LRAEIGSGKG EGWKLPAALA PPQQPFPLKQ DRHYHGNGKE LGNGGLKAAS SDEATEELKK 360 ALEAGRKGKG FIQEENLALQ LEEQARGMGN GSDGTDMSPE SEAAAEKGGE IWGTLEELLL 420 ACAVTRHGTS SWDSVAMEVQ TRSPLAARPG LTPHSCRLRF RHLHRRFSNV GGAGEEEVGD 480 GNGDDPDASA AEGWVDELRR LRVAELRRDV ERCDLSIGTL QSKVKRLREE RARSLSGAAK 540 PDAASGNDRL SGEEPGRSCR ESNSTDLKPP KHPGAVKEEE VAKQEASGES AAASKESSEV 600 RSTASLCRRR RSSGKTSGNE EEEAASTPRP LPAQSTPPSA LLDAVAAKLG PVMERLREHE 660 SEEGAAYRGM IRRHVDLETV RTKLEATTAS RADDDDCYPA SEFYRDLLLL CTNAVVFFPR 720 SEPEHAAAVE ARGLVSEHAS TVLREPKQEH VATAVPVPAP GPAPAGGDIV GPLIEKVKPL 780 IFCRKRSSIA KAAAMKKEIA EKAEPEKEHA ESEEEKEAVA AGPREKAWGL RTKKRGGAVR 840 RLAGTRLTDD AATTDGAKKG APGAGAAAAA EPRLVADEEE RVAAGDDTEA IGVESSDGRA 900 AKDPEERNWP DGRYRTWGWH QEGRQGWRSQ EGRRTAVETG RCSIDSAAVQ EGEDEQIGQA 960 GDGKAWREEV SRMTMVEAEL DRRPAKAKAK ANAMSSRSSK PLSCSLLPLL LLCTVNTAPS 1020 SATDCDPNDR EALLRVKAQL GDPVRLSSWQ PSTNCCAWEP AVFCNAAGRV TGLALYALDE 1080 LRAPVPPALG ELTELEILQV DSVPGLSGPI PASFGNLTRL RDLDINGTSI SGPVPGFLSC 1140 SNLSTLVIAN SKLVGPIPPS LAALPSLRYL DLSGNMLTGA IPPGLLHGSS RFLILSNNRL 1200 TGEIPPDDYS NVDTVDLSRN QLTGDPSPFL FGITKPAVKI DLSWNELRFD MTEVSFPHHL 1260 RFLDLSHNRI AGSVAKSLLD VKLEHFDVSY NDLCGEVPAG RFMAVHGPDC YAQNRCLCGT 1320 PLPPCDTGIR APSRHEAATR FTLLRIAALV TRVYQCRPFP SSAMQPLVAT DESLPGAHAS 1380 ARVVPPSTAP TRTCALAAWQ PPPPPTPPPR TWRAWWRTTA TSGGKPSEIT SAPACLGTRP 1440 PAGNGACPTR QNGAYSLTNE GDRVASRVRV KRVRGQEDAQ VRRWSKEDAG RSTAAAGCLP 1500 FLSLRRTRAP PAPSVQRLVH QTSPPFFAGS WLVRFECGHG LVDQDVGVIR VLNQFPRDLP 1560 PKTLSRMTRP KTM

Sequence ? help Back to Top

Protein Sequence Length: 1573 aa Download sequence Send to blast

MKASIKFRDD DRPLLRAKVP VGVLGLPFLS GLAAGGDAKD LRFDLSTAFA SGPALRLSYR  60
PNDPLQPFAV SVRTGLGPLG SPTRAPFALA AEFNVFSSNT PTFSIHVKPR VGDFALVSSV  120
CSPPLLPDPA SAPAPAPLAI KMTDFTTNGD DQGRDAHRTF SFNGNGFAAN VAAAAGKGGG  180
GVGALLSGMQ LMTRSVLPLW SKASLRFQWG LRVPPEIKAA LADDGYGRKA GNLAISKLPL  240
LVMNKITIEQ MPNAGSQPDA DRKKKKDVPR SGEEQEFSLM KRQLEALNAE SAILRRSIEG  300
LRAEIGSGKG EGWKLPAALA PPQQPFPLKQ DRHYHGNGKE LGNGGLKAAS SDEATEELKK  360
ALEAGRKGKG FIQEENLALQ LEEQARGMGN GSDGTDMSPE SEAAAEKGGE IWGTLEELLL  420
ACAVTRHGTS SWDSVAMEVQ TRSPLAARPG LTPHSCRLRF RHLHRRFSNV GGAGEEEVGD  480
GNGDDPDASA AEGWVDELRR LRVAELRRDV ERCDLSIGTL QSKVKRLREE RARSLSGAAK  540
PDAASGNDRL SGEEPGRSCR ESNSTDLKPP KHPGAVKEEE VAKQEASGES AAASKESSEV  600
RSTASLCRRR RSSGKTSGNE EEEAASTPRP LPAQSTPPSA LLDAVAAKLG PVMERLREHE  660
SEEGAAYRGM IRRHVDLETV RTKLEATTAS RADDDDCYPA SEFYRDLLLL CTNAVVFFPR  720
SEPEHAAAVE ARGLVSEHAS TVLREPKQEH VATAVPVPAP GPAPAGGDIV GPLIEKVKPL  780
IFCRKRSSIA KAAAMKKEIA EKAEPEKEHA ESEEEKEAVA AGPREKAWGL RTKKRGGAVR  840
RLAGTRLTDD AATTDGAKKG APGAGAAAAA EPRLVADEEE RVAAGDDTEA IGVESSDGRA  900
AKDPEERNWP DGRYRTWGWH QEGRQGWRSQ EGRRTAVETG RCSIDSAAVQ EGEDEQIGQA  960
GDGKAWREEV SRMTMVEAEL DRRPAKAKAK ANAMSSRSSK PLSCSLLPLL LLCTVNTAPS  1020
SATDCDPNDR EALLRVKAQL GDPVRLSSWQ PSTNCCAWEP AVFCNAAGRV TGLALYALDE  1080
LRAPVPPALG ELTELEILQV DSVPGLSGPI PASFGNLTRL RDLDINGTSI SGPVPGFLSC  1140
SNLSTLVIAN SKLVGPIPPS LAALPSLRYL DLSGNMLTGA IPPGLLHGSS RFLILSNNRL  1200
TGEIPPDDYS NVDTVDLSRN QLTGDPSPFL FGITKPAVKI DLSWNELRFD MTEVSFPHHL  1260
RFLDLSHNRI AGSVAKSLLD VKLEHFDVSY NDLCGEVPAG RFMAVHGPDC YAQNRCLCGT  1320
PLPPCDTGIR APSRHEAATR FTLLRIAALV TRVYQCRPFP SSAMQPLVAT DESLPGAHAS  1380
ARVVPPSTAP TRTCALAAWQ PPPPPTPPPR TWRAWWRTTA TSGGKPSEIT SAPACLGTRP  1440
PAGNGACPTR QNGAYSLTNE GDRVASRVRV KRVRGQEDAQ VRRWSKEDAG RSTAAAGCLP  1500
FLSLRRTRAP PAPSVQRLVH QTSPPFFAGS WLVRFECGHG LVDQDVGVIR VLNQFPRDLP  1560
PKTLSRMTRP KTM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ogq_A	3e-63	1025	1325	3	312	POLYGALACTURONASE INHIBITING PROTEIN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	261	266	RKKKKD

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4217	3	6