PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01568.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 369aa MW: 39313.4 Da PI: 6.0752

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01568.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.3	3.1e-09	203	250	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq Zmw_sc01568.1.g00130.1.sm.mk 203 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 250 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-15	197	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.14E-10	197	254	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.8E-15	199	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.301	199	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-6	203	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.4E-10	205	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MESRATGGDY IASLLSSSPR LDFGVLGGLP TLEGVAGDGG DSLEKFCGDP GFAERAARLS 60 SFSGQRFGGA GGLFGLPPPS RAASNGDFGG SRETSSVSDP ASAMRDANAK KRKAPAAPKG 120 KGMEPSSQAG EQNNSISDAK RCKTDGGEKK DDSPVKPKAE QAGSDISVED NGQKAGKGKN 180 AKPVEPPKDY VHVRARRGQA TDSHSLAERV RRERISQRMK VLQDLVPGCN KVIGKALMLD 240 EIINYVQSLQ RQVEMFQTCG PSASSVFSLE SSCSGFPFSD QGDVFRSYVT NGMENQCNLN 300 PLDLALSQAT NAQYAFQDGT PSSNLQQRNF WEEDLSGAFH IENGQSQEDG VSAQSFHGQL 360 QSGHMKMEF

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MESRATGGDY IASLLSSSPR LDFGVLGGLP TLEGVAGDGG DSLEKFCGDP GFAERAARLS  60
SFSGQRFGGA GGLFGLPPPS RAASNGDFGG SRETSSVSDP ASAMRDANAK KRKAPAAPKG  120
KGMEPSSQAG EQNNSISDAK RCKTDGGEKK DDSPVKPKAE QAGSDISVED NGQKAGKGKN  180
AKPVEPPKDY VHVRARRGQA TDSHSLAERV RRERISQRMK VLQDLVPGCN KVIGKALMLD  240
EIINYVQSLQ RQVEMFQTCG PSASSVFSLE SSCSGFPFSD QGDVFRSYVT NGMENQCNLN  300
PLDLALSQAT NAQYAFQDGT PSSNLQQRNF WEEDLSGAFH IENGQSQEDG VSAQSFHGQL  360
QSGHMKMEF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250\|UniProtKB:Q8GY61, ECO:0000269\|PubMed:24130508}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002445835.1	0.0	transcription factor bHLH78
Swissprot	Q9FJL4	1e-47	BH078_ARATH; Transcription factor bHLH78
TrEMBL	A0A0A9IY98	0.0	A0A0A9IY98_ARUDO; Uncharacterized protein
STRING	Sb07g026610.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]