PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01580.1.g00190.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 497aa MW: 52018.5 Da PI: 10.6556

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01580.1.g00190.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.3	1.1e-07	456	482	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++iN ++e L+el+P + Zmw_sc01580.1.g00190.1.am.mk 456 SHSLAERARREKINARMELLKELVPGC 482 8************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.88E-7	450	484	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.50E-5	450	484	No hit	No description
PROSITE profile	PS50888	11.166	452	497	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-7	455	482	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.3E-5	456	482	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MDHDGLPAVR KPQVLRTPGT GRSGRRIHCT GQWPRVRTAE QAVVLRSLTA VGWCSAARLP 60 VPVPGLKKAP SPPAFSVLRI RCISQWPHAC DMTAQEDRRA TSGLPRAGLD GWIATRRGAT 120 WHEDGGRLIC NPESCRCVYR WDLPKKPKPK LSTGARTWAV AIGSWTRGKK TTTTSAAADA 180 AAPAGFCCCT SGAEGSIPSG RATSLKKSAH AGRALKAASQ VTAVHHSSLP EMPIPLPFFP 240 RPLATPPHLS AAASYKCRRC LAPPLPPPPL FLSSQRPPTS PASAAPMHHP SPPPQEPPVS 300 RAEIQALIPA SSSAEPSSAT STTTASGGGG GSFTALLGLP TSQAMELLLP GAAPPAPAPA 360 PAFPSDPHLG DCAARFSAFA SPSSSSPTPR PPPPPPPVAA NAKRKADPAD RSSKVGKAAK 420 KGKTAADETK PAGGDGEDEK PAYVHVRARR GQATDSHSLA ERARREKINA RMELLKELVP 480 GCSKVCGCYH FPFTPHV

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MDHDGLPAVR KPQVLRTPGT GRSGRRIHCT GQWPRVRTAE QAVVLRSLTA VGWCSAARLP  60
VPVPGLKKAP SPPAFSVLRI RCISQWPHAC DMTAQEDRRA TSGLPRAGLD GWIATRRGAT  120
WHEDGGRLIC NPESCRCVYR WDLPKKPKPK LSTGARTWAV AIGSWTRGKK TTTTSAAADA  180
AAPAGFCCCT SGAEGSIPSG RATSLKKSAH AGRALKAASQ VTAVHHSSLP EMPIPLPFFP  240
RPLATPPHLS AAASYKCRRC LAPPLPPPPL FLSSQRPPTS PASAAPMHHP SPPPQEPPVS  300
RAEIQALIPA SSSAEPSSAT STTTASGGGG GSFTALLGLP TSQAMELLLP GAAPPAPAPA  360
PAFPSDPHLG DCAARFSAFA SPSSSSPTPR PPPPPPPVAA NAKRKADPAD RSSKVGKAAK  420
KGKTAADETK PAGGDGEDEK PAYVHVRARR GQATDSHSLA ERARREKINA RMELLKELVP  480
GCSKVCGCYH FPFTPHV

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP46077	2	3