PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01586.1.g00150.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 408aa MW: 43773.7 Da PI: 11.0347

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01586.1.g00150.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.3	4.2e-06	367	392	6	30
HHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 6 nerErrRRdriNsafeeLrellPk.a 30 +++Er RR ri +++ +L+el+P+ + Zmw_sc01586.1.g00150.1.sm.mkhc 367 SIAERERRTRISEKLRKLQELVPNmD 392 689********************966 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.559	361	408	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.9E-6	364	396	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.74E-4	365	398	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.1E-5	366	395	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MPASFHLQRG TSDPTSLVEP GGSPRRATRP ENQSRAIALP QSLSFAPSPA RLGSFKPTTR 60 PRSSHLRQQP PPQPNLPCFY ASRAHQQPKL TSSRPGAHRA RLPGRRLVNF TPAQRPEGAV 120 GMRRFMPGSG GVEPSSSPSS GGQQRHHQHG ERGGDTAAAG GLRYGGGDIS LGHGHDGRLP 180 QLGVDSAGRN EDRQQDGSMD MLARHSSSPV GFFSNLVMDN GYPSSKGAGG SGAEPHHHPS 240 KASNVNSWKM NFTRQQQQQG AASGHLSQIS ELDGGAFPPG LSAGGRSSGE SSGAASRSFS 300 GGFSIVGPWE ESREITATLG AYDPQFSGAM AGSALEMAGM DRYLQLQQDQ VPFKVRAKRG 360 CATHPRSIAE RERRTRISEK LRKLQELVPN MDKTLKHEQE KCTCCRKR

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MPASFHLQRG TSDPTSLVEP GGSPRRATRP ENQSRAIALP QSLSFAPSPA RLGSFKPTTR  60
PRSSHLRQQP PPQPNLPCFY ASRAHQQPKL TSSRPGAHRA RLPGRRLVNF TPAQRPEGAV  120
GMRRFMPGSG GVEPSSSPSS GGQQRHHQHG ERGGDTAAAG GLRYGGGDIS LGHGHDGRLP  180
QLGVDSAGRN EDRQQDGSMD MLARHSSSPV GFFSNLVMDN GYPSSKGAGG SGAEPHHHPS  240
KASNVNSWKM NFTRQQQQQG AASGHLSQIS ELDGGAFPPG LSAGGRSSGE SSGAASRSFS  300
GGFSIVGPWE ESREITATLG AYDPQFSGAM AGSALEMAGM DRYLQLQQDQ VPFKVRAKRG  360
CATHPRSIAE RERRTRISEK LRKLQELVPN MDKTLKHEQE KCTCCRKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808991.1	1e-104	transcription factor bHLH128-like
TrEMBL	A0A1E5USQ6	1e-106	A0A1E5USQ6_9POAL; Transcription factor bHLH128
STRING	Pavir.Aa01423.1.p	1e-102	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11531	31	41