PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01596.1.g00280.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 235aa    MW: 26016.8 Da    PI: 9.4958
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01596.1.g00280.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45.1e-1899153256
                                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   rk+ ++tkeq + Le  F++++ +s++++ eLA++++Lt rqV vWFqNrRa+ k
  Zmw_sc01596.1.g00280.1.sm.mk  99 RKKLRLTKEQSTLLEGTFRSHNILSHAQKHELARRVNLTPRQVEVWFQNRRARTK 153
                                   788899***********************************************98 PP
2HD-ZIP_I/II112.23.4e-3699186188
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   +kk+rl+keq++lLE +F++++ L++ +K+elar+++l+prqv+vWFqnrRARtk+kq+E+d+e Lkr+y++l++en+rL+
  Zmw_sc01596.1.g00280.1.sm.mk  99 RKKLRLTKEQSTLLEGTFRSHNILSHAQKHELARRVNLTPRQVEVWFQNRRARTKLKQTEVDCELLKRCYESLTDENQRLK 179
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLr 88 
                                    e  +++
  Zmw_sc01596.1.g00280.1.sm.mk 180 LELVAMQ 186
                                   9987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.31E-1980156IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-1984154IPR009057Homeodomain-like
PROSITE profilePS5007117.11995155IPR001356Homeobox domain
SMARTSM003898.6E-1497159IPR001356Homeobox domain
PfamPF000462.1E-1599153IPR001356Homeobox domain
CDDcd000861.85E-1499156No hitNo description
PROSITE patternPS000270130153IPR017970Homeobox, conserved site
PfamPF021839.3E-9155184IPR003106Leucine zipper, homeobox-associated
SMARTSM003405.6E-13155198IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MLYSPSCTEK DGLGSWLRLG IGGGCSPSRS HGERWSSVQF DKQEEIGGRD HKQAENKKSD  60
NKSSTRKRSA KAIDDDARSP SRGPSPSEDA QDGSDGGTRK KLRLTKEQST LLEGTFRSHN  120
ILSHAQKHEL ARRVNLTPRQ VEVWFQNRRA RTKLKQTEVD CELLKRCYES LTDENQRLKL  180
ELVAMQRSAA AAGLYVHQFP RAAAADTVSI CPSCDKDTVT SGGETSNKSS TSYSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197103TRKKLRL
2147155RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966133.17e-76homeobox-leucine zipper protein HOX18
SwissprotQ5Z6F62e-56HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18
TrEMBLA0A368QXX72e-74A0A368QXX7_SETIT; Uncharacterized protein
STRINGSi007238m5e-75(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81303448