PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01617.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 228aa    MW: 24255.4 Da    PI: 10.5844
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01617.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.32.4e-1080126252
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 
                                   +++GV+ +   g+W+ e r       + r++lg+f t+eeA+  ++a+  +
  Zmw_sc01617.1.g00070.1.sm.mk  80 RFRGVYARQ-PGQWATEFRSH---RLKVRHWLGTFATEEEAKTTYDAFEAR 126
                                   69***9887.9******5553...245********************9866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.4E-480130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-1280123IPR001471AP2/ERF domain
PROSITE profilePS5103212.74780139IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-980129IPR016177DNA-binding domain
PfamPF008472.9E-780124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MDARSIRISF TDPDATDSDS GDDASCRTAR SKQKATRKTS IVIFVAGPGF GSKAQMTGST  60
VPRGTKCGAR TAKRAAPKRR FRGVYARQPG QWATEFRSHR LKVRHWLGTF ATEEEAKTTY  120
DAFEARFLSS QPGGVLKPAP KHAGDGGSGR DVHRPLHPPD ENMQQIVLAL KAAMTAAMKS  180
SAEPRSSVAS APSISTLPMA SPPSSAAEKD GIGSHTCDGR AEPAVLMC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974648.16e-47dehydration-responsive element-binding protein 1E
TrEMBLK3YM521e-45K3YM52_SETIT; Uncharacterized protein
STRINGSi015330m2e-46(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140032023