PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01620.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 256aa    MW: 27736.6 Da    PI: 10.966
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01620.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.16.3e-11550148
                                  TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+W++eEd l+ + ++++G g +W + +   +   ++ +c+srw++yl
  Zmw_sc01620.1.g00110.1.am.mk  5 KGKWSKEEDRLIRNHIEKHGIGrSWQALSTLQP---CGRSCRSRWLNYL 50
                                  79******************999**********...***********97 PP
2Myb_DNA-binding37.74.8e-1257100247
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   g++T+ Ed+++ +   ++G+  W+ I++ ++ gRt+  +k++w++ 
  Zmw_sc01620.1.g00110.1.am.mk  57 GNFTPAEDKIICEMYSKMGSC-WSVISAQLP-GRTDLAVKNYWNST 100
                                   89*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.502150IPR017930Myb domain
SuperFamilySSF466891.72E-23397IPR009057Homeodomain-like
SMARTSM007171.5E-8452IPR001005SANT/Myb domain
PfamPF002492.1E-9550IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-17657IPR009057Homeodomain-like
CDDcd001672.29E-8750No hitNo description
PROSITE profilePS5129419.02751105IPR017930Myb domain
SMARTSM007174.0E-1255103IPR001005SANT/Myb domain
PfamPF002499.0E-1157100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-2258104IPR009057Homeodomain-like
CDDcd001677.03E-958101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MVMKKGKWSK EEDRLIRNHI EKHGIGRSWQ ALSTLQPCGR SCRSRWLNYL RPGLKHGNFT  60
PAEDKIICEM YSKMGSCWSV ISAQLPGRTD LAVKNYWNST LKKRFRPAAR TAAFARRRPH  120
PSPTASTSDA GTPARDLQLV IHSDESSTAG SSCAQPILPS SPTSVKAVHP LGPVGAGREP  180
IEAVPVRVSA PVRTDVGGAA SDDANGAATT GKAWSDRWDG HGHHLRAHVT PPSGLHGPGA  240
GLHMRVRRHP QLLALV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-22310525128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661280.11e-76transcription factor RAX2
TrEMBLA0A368SIM73e-75A0A368SIM7_SETIT; Uncharacterized protein
STRINGPavir.Ia01569.1.p6e-71(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122282638