PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01624.1.g00190.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YC

Protein Properties

Length: 236aa MW: 26250.9 Da PI: 4.7429

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01624.1.g00190.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	132.4	1.5e-41	88	191	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksd 78 ql++ w++q e++t+fk +++Pl+rikki+kad dvkm++ eaPv+++kace+fi eltlr+wl+a+ kr tl++ d Zmw_sc01624.1.g00190.1.sm.mk 88 QLQALWADQmaeSEQETEFKLNAIPLTRIKKIMKADRDVKMVAGEAPVVFAKACEMFIQELTLRAWLKARWFKRMTLRRKD 168 799**996656999************************************************************* PP NF-YC 79 iaaavtrtdifdflvdivprdel 101 + aa+ + d+fdflvdi+p del Zmw_sc01624.1.g00190.1.sm.mk 169 VVAAIIQNDMFDFLVDIIPPDEL 191 *****************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.64E-24	75	182	IPR009072	Histone-fold
Pfam	PF00808	7.4E-15	111	173	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	2.0E-29	112	187	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MSIRGRLKCV FDMEQPSPAN VNGGVTDSDT SAASSPMPYE HVTLAYVPPS AGAAIPPSSQ 60 SASEERQNAF HRTLQLDQQK QQQYLQEQLQ ALWADQMAES EQETEFKLNA IPLTRIKKIM 120 KADRDVKMVA GEAPVVFAKA CEMFIQELTL RAWLKARWFK RMTLRRKDVV AAIIQNDMFD 180 FLVDIIPPDE LKEAGVAAML PPTTAPAMGP SYVPEMTYEN QEQQRSTSDG GGNELG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	8e-34	96	187	3	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3L6PNJ3	7e-45	A0A3L6PNJ3_PANMI; Uncharacterized protein
STRING	Pavir.Fa02054.1.p	2e-53	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15703	12	16