PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01645.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LSD

Protein Properties

Length: 139aa MW: 15200.7 Da PI: 9.8424

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01645.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	29.5	1.2e-09	38	61	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gC t+L Y rGA+++RC++C t Zmw_sc01645.1.g00130.1.sm.mkhc 38 CNGCPTMLVYNRGATNIRCPNCRT 61 **********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	5.7E-10	36	63	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.9E-9	38	61	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	0.0012	74	103	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.5E-6	77	101	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MILTSESQLQ ACLISCTANK KNLSCKQKRT REMSELVCNG CPTMLVYNRG ATNIRCPNCR 60 TLNSTRSGAN QMGQLQCGRC PTTLAYQLGA STVGCPRCRH VNPVRDARPQ TVLVENPKTL 120 DEKGKLVSNV AVGVASWKR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021320000.1	2e-56	protein LOL4 isoform X3
Refseq	XP_021320001.1	2e-56	protein LOL4 isoform X3
Swissprot	Q84UR0	6e-51	LOL4_ORYSJ; Protein LOL4
TrEMBL	C5YMW9	7e-54	C5YMW9_SORBI; Uncharacterized protein
STRING	Sb07g002500.1	1e-54	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12333	29	38

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]