PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01653.1.g00270.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 278aa    MW: 31470.7 Da    PI: 6.3551
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01653.1.g00270.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.69e-081471802154
                                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                     k +yp+++++++L +++gL+ +q+ +WF N+R +
  Zmw_sc01653.1.g00270.1.sm.mkhc 147 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 180
                                     469*****************************87 PP
2ELK24.37.1e-09101122122
                             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                     ELK +L++++++++ ++++E++
  Zmw_sc01653.1.g00270.1.sm.mkhc 101 ELKIELKQGFKSKIEDVREEIL 122
                                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037916.4E-12544IPR005541KNOX2
SMARTSM012564.3E-11545IPR005541KNOX2
PROSITE profilePS512139.045101121IPR005539ELK domain
PROSITE profilePS5007111.726121184IPR001356Homeobox domain
SMARTSM003891.8E-10123188IPR001356Homeobox domain
SuperFamilySSF466894.71E-16123188IPR009057Homeodomain-like
CDDcd000864.67E-12124185No hitNo description
Gene3DG3DSA:1.10.10.602.3E-25128187IPR009057Homeodomain-like
PfamPF059209.7E-18141180IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MVMQAQYLML LCSFREQLQQ HVRVHAVEAV MACREIEQSL QDLTGATLEE GTGATMSEDE  60
DEPPIMEGTM DMGSEAHDMM GFGPLLPTDS ERSLMERVRQ ELKIELKQGF KSKIEDVREE  120
ILRKRRAGKL PGDTTSILKQ WWQQHAKWPY PTEDDKAKLV EETGLQLKQI NNWFINQRKR  180
NWHNNSQTST LKSKRKSNPV EGRKPVVGGR NPVVGNQAEG MHHPGGNLVQ GNRQGDILEQ  240
EELDSHHKAA RILAVVHIQQ EVGLADRCVT SVALEALP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468611.21e-135homeobox protein knotted-1-like 3
SwissprotQ94LW31e-131KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLA0A1B6QQV91e-133A0A1B6QQV9_SORBI; Uncharacterized protein
STRINGSi036727m1e-132(Setaria italica)
STRINGOBART03G01840.31e-133(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169