PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01666.1.g00120.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SRS

Protein Properties

Length: 231aa MW: 23756 Da PI: 8.989

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01666.1.g00120.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	201.7	2.2e-62	24	184	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskk 82 +sg++sC dCGnqakk+Cah+RCRtCC+srgfdC thvkstWvpa +rrerqq + aa ++ + + a+kr+r +++ Zmw_sc01666.1.g00120.1.am.mk 24 GSGGTSCYDCGNQAKKGCAHNRCRTCCNSRGFDCDTHVKSTWVPAVRRRERQQLAGAAGASPPS--PAGAAKRPRLACQTN 102 57889********************************************9999998777766..677889999999999 PP DUF702 83 qsalsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 + a s+t++s+a++++++etss lP++v+ +a+frcv+v+svddg+ e+aYq+av+i+Gh+f+G+Lyd G+e Zmw_sc01666.1.g00120.1.am.mk 103 TGANSRTSTSNATTPRSFETSSshqdasfresLPRHVRGPALFRCVQVTSVDDGQREVAYQAAVTINGHLFRGLLYDLGAE 183 999*************9999*****************************************************98 PP DUF702 154 e 154 + Zmw_sc01666.1.g00120.1.am.mk 184 D 184 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.6E-55	27	183	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	7.2E-25	29	71	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.9E-21	135	181	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
GSPGNKPPAV TDYGRGRADS GGSGSGGTSC YDCGNQAKKG CAHNRCRTCC NSRGFDCDTH 60 VKSTWVPAVR RRERQQLAGA AGASPPSPAG AAKRPRLACQ TNTGANSRTS TSNATTPRSF 120 ETSSSHQDAS FRESLPRHVR GPALFRCVQV TSVDDGQREV AYQAAVTING HLFRGLLYDL 180 GAEDARATSA AAQLGSSDLH LGSASANAAP DLYSGGSGPL ILGGLGYGNT P

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004962238.1	1e-101	protein LATERAL ROOT PRIMORDIUM 1
Refseq	XP_022680709.1	1e-101	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	3e-51	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	K3Z8B1	2e-99	K3Z8B1_SETIT; Uncharacterized protein
STRING	Si022781m	1e-100	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3579	36	79

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]