PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01676.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 386aa MW: 41950.4 Da PI: 8.9094

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01676.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	55.8	8e-18	197	243	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka+iL +A+eY+ksLq Zmw_sc01676.1.g00060.1.am.mk 197 VHNLSERRRRDRINEKMRALQELVPHC-----NKTDKASILDEAIEYLKSLQ 243 6***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.67E-18	188	247	No hit	No description
SuperFamily	SSF47459	3.01E-21	191	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.73	193	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.3E-15	197	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-21	197	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.4E-19	199	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MASGSRCSAY RHRTAGRRRT GVHKLLLLAD SEGLTATHPR PKISDSDVNS SSHPPFKCWI 60 TITVLSLLAA GDQTKAADGF WRPLNRSENP VCSLHHWTLD AGAAGCKKWI LAMDGGTGST 120 PPSQKRPLPP DGELVELLWQ DGAVVAHSQA QGHQNHRAHG PSGGNTGPSG DAEFEAVDET 180 RTSRRPASKR RTRAAEVHNL SERRRRDRIN EKMRALQELV PHCNKTDKAS ILDEAIEYLK 240 SLQLQVQIMW MTAGMAPMML PDGHQQLTAM GLNSSCMPHA TQVLTQMQRV PPFMNIPLRN 300 QMPRVSSAAT NVPNVANQDQ KNNIAGPRNR FLHPNGAPAA TPEVPSLFGY GSQMAHQNEI 360 QELLATIAAP ALEAEPPCSS DGTGTT

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MASGSRCSAY RHRTAGRRRT GVHKLLLLAD SEGLTATHPR PKISDSDVNS SSHPPFKCWI  60
TITVLSLLAA GDQTKAADGF WRPLNRSENP VCSLHHWTLD AGAAGCKKWI LAMDGGTGST  120
PPSQKRPLPP DGELVELLWQ DGAVVAHSQA QGHQNHRAHG PSGGNTGPSG DAEFEAVDET  180
RTSRRPASKR RTRAAEVHNL SERRRRDRIN EKMRALQELV PHCNKTDKAS ILDEAIEYLK  240
SLQLQVQIMW MTAGMAPMML PDGHQQLTAM GLNSSCMPHA TQVLTQMQRV PPFMNIPLRN  300
QMPRVSSAAT NVPNVANQDQ KNNIAGPRNR FLHPNGAPAA TPEVPSLFGY GSQMAHQNEI  360
QELLATIAAP ALEAEPPCSS DGTGTT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	205	KRRTRAAEVHNLSERRRR
2	201	206	ERRRRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004955437.1	1e-110	transcription factor PIF4
Swissprot	Q10CH5	8e-74	PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13
TrEMBL	A0A2T7EKQ1	1e-109	A0A2T7EKQ1_9POAL; Uncharacterized protein
STRING	Si030028m	1e-109	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3174	34	82

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224] Todaka D, et al. Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress. Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52 [PMID:22984180]