PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01693.1.g00150.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 180aa MW: 19335.7 Da PI: 7.6988

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01693.1.g00150.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C + F++ L H+++H Zmw_sc01693.1.g00150.1.am.mk 66 YTCAFCRREFKSAPALGGHMNVH 88 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.65E-6	63	92	No hit	No description
PROSITE profile	PS50157	10.741	66	93	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	68	88	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MAPTSSTEPD VKRITRHQHQ FLKKQQPQQQ LKPAVMCSWA AATVRPAHDD AADEDALGGA 60 WPPRSYTCAF CRREFKSAPA LGGHMNVHRR DRAKMRGHHG AAGQKLVGAA PATGDTPTHA 120 ATPTGYAVLY PILSSSATGT VLTPSGDVLL STRLALAPAH DVSDEDDDKE VDLELRLGWP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	2e-12	61	88	2	29	superman protein
2l1o_A	2e-12	61	88	2	29	Transcriptional regulator SUPERMAN
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825408.1	6e-51	zinc finger protein 11-like
TrEMBL	A0A1E5VI67	7e-62	A0A1E5VI67_9POAL; Uncharacterized protein
STRING	Si012796m	9e-61	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11852	26	33