PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01693.1.g00250.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 358aa    MW: 39126.9 Da    PI: 6.5015
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01693.1.g00250.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13e-163180148
                                    TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                                    +g+WT+eEd  lv+ ++++Gg+  +W+  ++  g++R++k+c++rw +yl
  Zmw_sc01693.1.g00250.1.am.mkhc 31 KGPWTEEEDRTLVEHIQKHGGHvsSWRNLPKAAGLNRCGKSCRLRWTNYL 80
                                    79**********************************************97 PP
2Myb_DNA-binding54.82.1e-1786130147
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     rg++T +E+ l++ ++++lG++ W+tIa ++  gRt++++k++w+++
  Zmw_sc01693.1.g00250.1.am.mkhc  86 RGNFTDDEERLIIALHAELGNK-WSTIATHLE-GRTDNEIKNYWNTH 130
                                     89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.8282680IPR017930Myb domain
SuperFamilySSF466892.34E-2828127IPR009057Homeodomain-like
SMARTSM007171.8E-113082IPR001005SANT/Myb domain
PfamPF002498.9E-153180IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-223287IPR009057Homeodomain-like
CDDcd001671.03E-93380No hitNo description
PROSITE profilePS5129427.54981135IPR017930Myb domain
SMARTSM007174.0E-1685133IPR001005SANT/Myb domain
PfamPF002493.3E-1586130IPR001005SANT/Myb domain
CDDcd001673.09E-1288131No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2688136IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
SPSREKRACR KTSIESMGRS PCCCHDAGVK KGPWTEEEDR TLVEHIQKHG GHVSSWRNLP  60
KAAGLNRCGK SCRLRWTNYL RPDIKRGNFT DDEERLIIAL HAELGNKWST IATHLEGRTD  120
NEIKNYWNTH IRKKLVRMGV DPVTHQRLPP DDILNGALAS PGGLPGTLLC AAASSFRDLD  180
TALRQAQALQ LLLQVVGSSS NLTGSAALLG NYNLPTGNAM LSNVNNSVAP NLQDQMMSIF  240
SPANNRPAAG YYPPCDAGAA NFAEQGMAQQ CLKSSAPSPS CGSPNGELAA DQYCNTTAAL  300
ERPAAYTQEA AATGVDLPAP VQTFTDLLEP REMPNMYSLE EDDRLWDWDD MLHSSFHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27311357108B-MYB
1h8a_C1e-273113527128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105856.11e-121transcription factor MYB2
SwissprotQ9S9Z29e-66MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A3L6Q4P11e-121A0A3L6Q4P1_PANMI; Transcription factor MYB39
STRINGGRMZM2G081557_P011e-122(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]