PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01694.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 185aa MW: 20198.8 Da PI: 9.7753

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01694.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.5	6.6e-32	133	182	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ Zmw_sc01694.1.g00080.1.am.mk 133 KRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 182 79***********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.4E-41	125	184	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.473	125	185	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.61E-41	126	183	No hit	No description
SuperFamily	SSF55455	1.96E-29	126	184	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	127	181	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-33	127	147	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.3E-27	134	181	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-33	147	162	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-33	162	183	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MDQEVDDRGD VRKNVRSINA SVSGPGQRWR RPGDRVVEEV LVGKGERDAF ASIRDHHLSH 60 PASSSCAYPL SLSGSHSSPA PKEAHSIPPT MLNMMSDLSC GPSAKGKEQP APANSGPSAG 120 MSEKLGRGKI EIKRIENSTN RQVTFCKRRN GLLKKAYELS VLCDAEVALI VFSSRGRLYE 180 YANHR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	4e-21	125	182	1	58	Myocyte-specific enhancer factor 2B
1tqe_Q	4e-21	125	182	1	58	Myocyte-specific enhancer factor 2B
1tqe_R	4e-21	125	182	1	58	Myocyte-specific enhancer factor 2B
1tqe_S	4e-21	125	182	1	58	Myocyte-specific enhancer factor 2B
5f28_A	4e-21	125	182	1	58	MEF2C
5f28_B	4e-21	125	182	1	58	MEF2C
5f28_C	4e-21	125	182	1	58	MEF2C
5f28_D	4e-21	125	182	1	58	MEF2C
6c9l_A	4e-21	125	182	1	58	Myocyte-specific enhancer factor 2B
6c9l_B	4e-21	125	182	1	58	Myocyte-specific enhancer factor 2B
6c9l_C	4e-21	125	182	1	58	Myocyte-specific enhancer factor 2B
6c9l_D	4e-21	125	182	1	58	Myocyte-specific enhancer factor 2B
6c9l_E	4e-21	125	182	1	58	Myocyte-specific enhancer factor 2B
6c9l_F	4e-21	125	182	1	58	Myocyte-specific enhancer factor 2B
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001105946.1	1e-45	AGAMOUS-like protein
Refseq	XP_008654205.1	1e-45	AGAMOUS-like protein isoform X1
TrEMBL	A0A0A8XZ73	2e-49	A0A0A8XZ73_ARUDO; Uncharacterized protein
TrEMBL	A0A0A9TLG6	2e-49	A0A0A9TLG6_ARUDO; Uncharacterized protein
STRING	GRMZM2G359952_P01	5e-45	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398