PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01700.1.g00220.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 224aa MW: 23773.1 Da PI: 8.202

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01700.1.g00220.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.3	2.4e-31	128	186	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v++tYeg+Hnh Zmw_sc01700.1.g00220.1.am.mkhc 128 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCNVKKRVERDRDDPTYVVTTYEGTHNHV 186 59********************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.2E-33	114	188	IPR003657	WRKY domain
SuperFamily	SSF118290	4.45E-28	120	188	IPR003657	WRKY domain
PROSITE profile	PS50811	31.766	123	188	IPR003657	WRKY domain
SMART	SM00774	3.0E-35	128	187	IPR003657	WRKY domain
Pfam	PF03106	1.1E-24	129	185	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MAAVGARPVL YHPAAGDEAL SMSSYFSRGG SSTSSSASSF SAALAPAPPP DPAEQFDISE 60 FFEDVAQGVF GGPPHAVDAT STAHVVPADS GAAAAGAGGQ SAANARSAAE RPRTERIAFR 120 MRSEIEVLDD GYKWRKYGKK SVKNSPNPRN YYRCSTEGCN VKKRVERDRD DPTYVVTTYE 180 GTHNHVSPST VYYASQDAAS GRFFVAGTQP PPAGRPFPSS ASRW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-25	123	189	12	78	Probable WRKY transcription factor 4
2lex_A	3e-25	123	189	12	78	Probable WRKY transcription factor 4
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002440147.1	3e-87	probable WRKY transcription factor 50
TrEMBL	C5YUJ2	7e-86	C5YUJ2_SORBI; Uncharacterized protein
STRING	Sb09g026830.1	1e-86	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP441	37	206