PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01728.1.g00120.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 341aa MW: 36043.3 Da PI: 9.511

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01728.1.g00120.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.7	5.4e-05	199	244	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 a n+ r RR+r+ +++ L++l+ + +K + a++L +A YI+ L Zmw_sc01728.1.g00120.1.sm.mkhc 199 ATNKKPRVRRERLGERIIALQQLVSPF-----GKSDTATVLHEALGYIRFL 244 679999******************8.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.125	195	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-11	199	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-7	201	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-4	201	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.45E-4	205	249	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MEQFEPTWGS ARPRNKDERE NSRAKPSKKK LGNDESYVHY ASRSLEEEII TEAGGRGYLD 60 MVGLGDEDFF RGLSPISSSS VVSAVTTGST PATASSPTCV SYMGMAPRHH MLNFTGQEQY 120 NYDGNGPFGL QYNAGDHAIP VVVPQKSSPT TECSSSISSM SSSPTVTSIS AISSKKPQAF 180 KKKGARCGGQ RKAAAAAAAT NKKPRVRRER LGERIIALQQ LVSPFGKSDT ATVLHEALGY 240 IRFLHDQVQV LSSPYMNRLP GAGGRCRDGG GAAATAERPE EPGAVAGADL VHGSFCRRCH 300 SNGADLWSVA VPSGVTNATA SRLNKGAAAM LPGGGHNGRL D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	262	270	GGRCRDGGG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466417.1	3e-80	transcription factor bHLH123 isoform X1
TrEMBL	A0A3L6TPW7	1e-83	A0A3L6TPW7_PANMI; Uncharacterized protein
STRING	Pavir.J02211.1.p	1e-86	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8082	25	29