PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01737.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 222aa    MW: 25457.2 Da    PI: 7.1926
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01737.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.7e-18449147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  rg W + Ede+l+++v+++G+++W++Ia+++  gR++k+c++rw++ 
  Zmw_sc01737.1.g00010.1.am.mk  4 RGHWRPSEDEKLKELVTLYGPHNWNAIAEKLK-GRSGKSCRLRWFNQ 49
                                  899****************************9.***********996 PP
2Myb_DNA-binding51.81.8e-165699146
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                  r ++++eE+ell+  ++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Zmw_sc01737.1.g00010.1.am.mk 56 RSPFSEEEEELLLASHRVHGNR-WAVIARFFP-GRTDNAVKNHWHV 99
                                  789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.452154IPR017930Myb domain
SMARTSM007171.0E-14352IPR001005SANT/Myb domain
PfamPF002498.1E-17449IPR001005SANT/Myb domain
SuperFamilySSF466893.74E-29497IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-26557IPR009057Homeodomain-like
CDDcd001671.22E-13748No hitNo description
SMARTSM007174.1E-1555103IPR001005SANT/Myb domain
PROSITE profilePS5129419.73555105IPR017930Myb domain
PfamPF002499.2E-145698IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2058104IPR009057Homeodomain-like
CDDcd001674.95E-67198No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MCTRGHWRPS EDEKLKELVT LYGPHNWNAI AEKLKGRSGK SCRLRWFNQL DPRINRSPFS  60
EEEEELLLAS HRVHGNRWAV IARFFPGRTD NAVKNHWHVI MARRCRERAR MSNRPQCGAA  120
AGTTMENDNT CRNAKKPRPD DANCLASLVD KYRSEFTGPF AIGHDNTEKD RSTTNEEGTD  180
KSVEFYDFLQ VNATSSDTKC GSSIEDQDEN RDDQAEGHVQ FI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-3321055108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644561.11e-121transcription factor MYB52 isoform X3
SwissprotQ6R0C41e-72MYB52_ARATH; Transcription factor MYB52
TrEMBLA0A060D7S31e-119A0A060D7S3_MAIZE; MYB transcription factor (Fragment)
STRINGGRMZM2G455869_P011e-120(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  3. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]