PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01755.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 452aa MW: 48565.6 Da PI: 9.1673

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01755.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	63.8	4.2e-20	196	242	1	47
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47 +CaaCk+lrr+Ca +Cv+apyfp ++p+kfanvh++FGasnv+kll+ Zmw_sc01755.1.g00050.1.am.mk 196 PCAACKLLRRRCAVGCVFAPYFPPAEPHKFANVHRIFGASNVSKLLQ 242 7********************************************98 PP
2	DUF260	54.6	3.1e-17	327	379	48	100
DUF260 48 alpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++p ++r da+sslvyeA+ar+rdPvyG+v+ i++lqqq+e+l+a+lal+++e Zmw_sc01755.1.g00050.1.am.mk 327 EIPVQHRGDAVSSLVYEANARVRDPVYGCVAAISSLQQQVETLQAQLALAQAE 379 578999*******************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	13.716	195	312	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-19	196	242	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.8E-15	326	377	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MRGMESEIKK EAGRSVDGRK APGWGGMHDG TAAARSLSVW CPYQTSLSQL PMSSPTLCEL 60 FPSLSVVCGH VLCTFRRLLC SPPVSLYLCM PAGLRWDRKG ARLQLLLLQK DPSRPTCPVL 120 ACNYQHSQPP NLATTIHIGG QQSRLHSTPS DHRCGAWTLR FRGHAVLSFL AMKDEAAVGG 180 GRAAGAGGGG ATAAAPCAAC KLLRRRCAVG CVFAPYFPPA EPHKFANVHR IFGASNVSKL 240 LQVRAANSLL AGCFGYRLAC SDRDRASVFS SNLHADGAGT NSPYVAHRLF PAGYVRKKLQ 300 VHHRAAAPAS TDTPWCFSAN LACSTIEIPV QHRGDAVSSL VYEANARVRD PVYGCVAAIS 360 SLQQQVETLQ AQLALAQAEM VRLNMNNAYM AHRLKKARSI GGGGSSTNTG SPSSMSSPKM 420 EQPETHCKAT PELLDMVVDQ PYSMDDSQLW SY

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MRGMESEIKK EAGRSVDGRK APGWGGMHDG TAAARSLSVW CPYQTSLSQL PMSSPTLCEL  60
FPSLSVVCGH VLCTFRRLLC SPPVSLYLCM PAGLRWDRKG ARLQLLLLQK DPSRPTCPVL  120
ACNYQHSQPP NLATTIHIGG QQSRLHSTPS DHRCGAWTLR FRGHAVLSFL AMKDEAAVGG  180
GRAAGAGGGG ATAAAPCAAC KLLRRRCAVG CVFAPYFPPA EPHKFANVHR IFGASNVSKL  240
LQVRAANSLL AGCFGYRLAC SDRDRASVFS SNLHADGAGT NSPYVAHRLF PAGYVRKKLQ  300
VHHRAAAPAS TDTPWCFSAN LACSTIEIPV QHRGDAVSSL VYEANARVRD PVYGCVAAIS  360
SLQQQVETLQ AQLALAQAEM VRLNMNNAYM AHRLKKARSI GGGGSSTNTG SPSSMSSPKM  420
EQPETHCKAT PELLDMVVDQ PYSMDDSQLW SY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-20	193	382	8	113	LOB family transfactor Ramosa2.1
5ly0_B	1e-20	193	382	8	113	LOB family transfactor Ramosa2.1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP35252	3	4