PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01766.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 80aa MW: 8633.28 Da PI: 7.5269

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01766.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.9	8.4e-12	2	42	3	44
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +W+t E e++ +a + +G++ W+++a+ +g g+t +++ ++ Zmw_sc01766.1.g00130.1.sm.mk 2 SWSTSENERFERALATYGSD-WERVAAAVGGGKTVDDVRRHY 42 7*****************.******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00249	4.6E-10	1	42	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	13.956	1	50	IPR017884	SANT domain
Gene3D	G3DSA:1.10.10.60	7.4E-6	2	43	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-4	2	48	IPR001005	SANT/Myb domain
CDD	cd00167	3.17E-7	2	42	No hit	No description
SuperFamily	SSF46689	9.72E-12	2	51	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
MSWSTSENER FERALATYGS DWERVAAAVG GGKTVDDVRR HYALLVEDVG SIESGGYGYP 60 NGSAGNGNRN NRGRANRPQA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024313364.1	2e-30	protein RADIALIS-like 3
Swissprot	F4JVB8	2e-16	RADL1_ARATH; Protein RADIALIS-like 1
Swissprot	Q6NNN0	1e-16	RADL3_ARATH; Protein RADIALIS-like 3
TrEMBL	I1H7D6	4e-29	I1H7D6_BRADI; Uncharacterized protein
STRING	MLOC_69872.1	2e-32	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP270	38	230

Publications ? help Back to Top
Zhang M, et al. ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development. Plant Physiol., 2013. 163(2): p. 713-20 [PMID:23922269]