PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01769.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WOX

Protein Properties

Length: 263aa MW: 30320.1 Da PI: 8.7037

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01769.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.3	3.6e-20	70	131	1	57
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++ R+++t+eq+++L elF+ r+ps+e++++++++l +++ ++V++WFqN++a+e++ Zmw_sc01769.1.g00100.1.am.mk 70 KCGRWNPTAEQVKVLTELFRAgLRTPSTEQIQRISTHLsafgKVESKNVFYWFQNHKARERH 131 568***************99************************************95 PP
2	Wus_type_Homeobox	110.2	1.2e-35	71	132	3	64
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 + RW+Pt+eQ+k+L+el+++GlrtP++e+iqri+++L+++Gk+e+kNVfyWFQN+kaRer++ Zmw_sc01769.1.g00100.1.am.mk 71 CGRWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQNHKARERHH 132 78**********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.122	67	132	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.13E-12	69	135	IPR009057	Homeodomain-like
SMART	SM00389	7.6E-4	69	136	IPR001356	Homeobox domain
Pfam	PF00046	1.7E-17	71	131	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.2E-7	73	130	IPR009057	Homeodomain-like
CDD	cd00086	4.56E-4	73	133	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MSGAAHEIEQ RSCQQWLLSR MSPSSLDLTV RGNKRKAPSR DFRIRYCHCH CHCHDRGLGR 60 APCPGYISVK CGRWNPTAEQ VKVLTELFRA GLRTPSTEQI QRISTHLSAF GKVESKNVFY 120 WFQNHKARER HHHKKRRRGA SSPDSGSGSN EDDGRGASQE AEVDLVLQPP ESKREARSYS 180 HHHRFMTCYV RDVVEQQADE AFWERPTREV ETLELFPLKS YDLEAEKVRY VRSAAEQCRE 240 FSFFDVAAGR DPPLELRLCS FGL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in the specification and maintenance of the stem cells (QC cells) in the root apical meristem (RAM). {ECO:0000269\|PubMed:12904206}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642985.1	1e-122	WUSCHEL-related homeobox 9
Swissprot	Q8W0F1	1e-123	WOX9_ORYSJ; WUSCHEL-related homeobox 9
TrEMBL	A0A0D3EWE2	1e-121	A0A0D3EWE2_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0N550	1e-121	A0A0E0N550_ORYRU; Uncharacterized protein
TrEMBL	A0A3Q8APT2	1e-121	A0A3Q8APT2_ORYSA; Transcriptional regulator WOX
TrEMBL	A2WX37	1e-121	A2WX37_ORYSI; Uncharacterized protein
TrEMBL	I1NTF8	1e-121	I1NTF8_ORYGL; Uncharacterized protein
STRING	Pavir.J34036.1.p	1e-122	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9411	36	43

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Li S, et al. OsFIE2 plays an essential role in the regulation of rice vegetative and reproductive development. New Phytol., 2014. 201(1): p. 66-79 [PMID:24020752] Chu H, et al. A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice. J. Exp. Bot., 2013. 64(17): p. 5359-69 [PMID:24043854] Wang W, et al. Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice. PLoS Genet., 2014. 10(3): p. e1004154 [PMID:24625559] Coudert Y, et al. Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation. New Phytol., 2015. 206(1): p. 243-54 [PMID:25442012]