PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01775.1.g00100.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 769aa    MW: 80559.5 Da    PI: 8.4831
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01775.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.38e-08432466138
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38 
                                   s y+GV+++++ grW A+I  +s    +k  +lg+f t
  Zmw_sc01775.1.g00100.1.am.mk 432 SIYRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFST 466
                                   57****************999754...4********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.4E-5312403IPR001471AP2/ERF domain
PROSITE profilePS5103211.601312397IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-6366398IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-6368397IPR001471AP2/ERF domain
CDDcd000187.79E-11432580No hitNo description
SuperFamilySSF541717.19E-6432466IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.7E-5433466IPR001471AP2/ERF domain
SMARTSM003809.1E-4433477IPR001471AP2/ERF domain
PROSITE profilePS5103212.194433578IPR001471AP2/ERF domain
SMARTSM003803.6E-5525584IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-6552578IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MTSNSSQNVS SCSTGGGDAA AGGGSWLGFS LSPHHVASMD AAADGARGVP QHHLGLFYPP  60
VTSTPAPFCY ALGGSGQDSV VGQAAGASGG GFYPALSSMP LRSDGSLCIT DAYRRSEEGQ  120
HHGMVASSAS PKLEDFLGAG PAMALSLDNS SFYYGGGHGG HHGHGQDHGG YPQPLHCAMI  180
PGAAATHDVY GHASMVDEQS AAAIAASWFA ARGVGGYDVN STGVDAGLVP CHPLALSMSS  240
GTGSQASCVT MQMGAHADPV AEYIAMEGSK KXXXXARGPR SKKRGTDRGA GAGQKQTVHR  300
KSIDTFGQRT SQYRGVTRYS HSHPRAHCLC CCYRRPGATG RGAPSPSSSP HACVVFHGAK  360
AGIGGRGGGY DMEEKAARAY DLAALKYWGP STHINFSLED YREELEEMKN MTRQEYVAHL  420
RRKSSGFSRG ASIYRGVTRH HQHGRWQARI GRVSGNKDLY LGTFSTCSVF HLLFLSIHVL  480
QILVPLAPPR RMFALPIPAH FSPRFCACVA GCRPQLALAF GHLFVRLARR GPAHLRAPDR  540
ASLSRFACLR IATQEEAAEA YDVAAIKFRG LNAVTNFDIT RYDVEKIMES STLLPSELVR  600
RRKDGDVGTV AAAAAITEGD ATAVANAAAA LVHAGNGSNA VEWKIQAAAA LPAAPGRTDE  660
HVQQNHGILA SEAFSAFSGL DDMVPGVEAD NAHMSNASSL ATSVSNSREQ SPDRGGGLAV  720
LFAKPVAAAS KLACPPLPLG SWVSPSPVSA RPVVSIAHLP MFAAWTDAA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796942.10.0AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A1E5VRG80.0A0A1E5VRG8_9POAL; AP2-like ethylene-responsive transcription factor ANT
STRINGPavir.J24038.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133