PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01777.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 125aa MW: 13467.5 Da PI: 4.6043

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01777.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	42	2e-13	16	42	30	56
G2-like 30 ktilelmkvkgLtlehvkSHLQkYRla 56 ++i+elmkv+gLt+++vkSHLQkYRl+ Zmw_sc01777.1.g00090.1.sm.mk 16 RAIRELMKVDGLTNDEVKSHLQKYRLH 42 689**********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.2E-5	12	45	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-12	14	45	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.7E-11	16	42	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MGPAVRTDDV QALAARAIRE LMKVDGLTND EVKSHLQKYR LHTRRSSSSD GTVDGQAATT 60 LWSGPEEQQQ QYTTSQHSTS QSGSPHGPLQ LTVSSRAVSV TAGGDSCYDD GDEEEDEKAE 120 SRSSI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809801.1	3e-37	transcription factor NIGTH1-like
TrEMBL	A0A1E5VCU6	5e-41	A0A1E5VCU6_9POAL; Myb family transcription factor EFM
STRING	Pavir.Ca02525.1.p	2e-38	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5582	33	53