PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01779.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

AP2

Protein Properties

Length: 249aa MW: 26546.7 Da PI: 6.6392

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01779.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	35.3	2.8e-11	88	144	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++ k++g+++A+++d s+ g krk + g++ t+e+Aaka++ a++k++g Zmw_sc01779.1.g00030.1.am.mkhc 88 SRFHGVTRLKWSGKYEAHLWDnTSQvEGrKRKGKH-GSYVTEEQAAKAHDLAALKYWG 144 789****************55558777778888.999999***********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	7.7E-8	88	144	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.54E-11	88	155	IPR016177	DNA-binding domain
SMART	SM00380	1.8E-12	89	160	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	15.158	89	154	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.1E-9	89	155	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.2E-5	90	101	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	11.495	141	216	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.7E-7	172	216	IPR001471	AP2/ERF domain
SMART	SM00380	1.4E-8	177	222	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.83E-8	177	218	IPR016177	DNA-binding domain
PRINTS	PR00367	6.2E-5	198	218	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MATVHPESSS PGPTAAPPPP PPHPPAASVD PAAQADGGGE IAALDKQLAV VVGGGGAERK 60 SGPGAGGGGG GGKLVAEAMR KYAAPRSSRF HGVTRLKWSG KYEAHLWDNT SQVEGRKRKG 120 KHGSYVTEEQ AAKAHDLAAL KYWGIGPNTK LNFNVSDYEK EIDIMKAMSQ DEFVAYIRRR 180 KDGKWQARIE TEEEAAEAYD IAAIQLRGVH AVTNFDISNY CENDLTKIED PSEVAKLEGP 240 SEAMKLAGQ

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269\|PubMed:21481033}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin. {ECO:0000269\|PubMed:21481033}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004977550.1	1e-118	AP2-like ethylene-responsive transcription factor AIL1
Swissprot	Q84Z02	6e-46	CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBL	A0A3L6RDA8	1e-121	A0A3L6RDA8_PANMI; AP2-like ethylene-responsive transcription factor AIL1
STRING	Si010747m	1e-118	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7864	35	48

Publications ? help Back to Top
Kitomi Y, et al. The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling. Plant J., 2011. 67(3): p. 472-84 [PMID:21481033] Li P,Xue H Structural characterization and expression pattern analysis of the rice PLT gene family. Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97 [PMID:21807632]