PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01783.1.g00160.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 438aa    MW: 45734.4 Da    PI: 5.1324
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01783.1.g00160.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.49.5e-15188238155
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     s+y+GV+ +k  grW+A+   +     +k+++lg f+t+eeAa+a+++a+ k +g
  Zmw_sc01783.1.g00160.1.sm.mkhc 188 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 238
                                     89********.7******5553..2.26**********************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.74371153IPR001471AP2/ERF domain
SMARTSM003807.7E-6114159IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-6123154IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-8124153IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-18188248IPR016177DNA-binding domain
PfamPF008479.6E-11188238IPR001471AP2/ERF domain
CDDcd000183.83E-26188248No hitNo description
PROSITE profilePS5103216.489189246IPR001471AP2/ERF domain
SMARTSM003803.9E-34189252IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-17189247IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MWDLNDTPAA EAVATVSPSA DDSGASSSSA AALVDVPEDA DDADAVVTRQ FFPTPAATAA  60
GAGSTDALAP PGRGPASSRP GCCCCVVEEE PARAAVAQLA VPRRDVLPPD GAVGVAHMGL  120
WQAGGFDTAH AAARAYDRAA IKFRGVEADI NFSLEDYKDD MKQMGNLSKE EFVHVLRRQS  180
TGCPRGSSKY RGVTLHKCGR WEARMGQFLG KKYVYLGLFD TEEEAARAYD RAAIKCNGKD  240
AVTNFDASVY AEEMEATSAA TGGDDEHNLD LSLGSSAGSK RGSLDGVGDE ESSDQRVPMA  300
FDLDWQTAAA RSTKAKFDEN SQQAQMPPAS QAYHLSFNPR HHHQFLSSGD PGTAGGLSLT  360
IGGAGGGGGH WPPQPQRLPH GWGNGGGGGA TTWPVMPPAY PPAPGAATAA AASSRFPPYV  420
TTQQAPGWNG FHSLTRPT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824499.11e-151AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotB8AVJ91e-146APL25_ORYSI; APETALA2-like protein 5
TrEMBLA0A0D3G0Y91e-156A0A0D3G0Y9_9ORYZ; Uncharacterized protein
STRINGOBART04G27540.11e-157(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55143658
Publications ? help Back to Top
  1. Zhou Y, et al.
    Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1.
    Plant Cell, 2012. 24(3): p. 1034-48
    [PMID:22408071]