PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01786.1.g00200.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 227aa MW: 24124.9 Da PI: 9.0368

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01786.1.g00200.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.4	3.2e-38	48	105	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC+s++tkfCyynny++sqPr+fCk+CrryWtkGG+lrnvPvGgg+rk+ +ss Zmw_sc01786.1.g00200.1.sm.mk 48 GDPCPRCESRDTKFCYYNNYNTSQPRHFCKSCRRYWTKGGSLRNVPVGGGTRKSSSSS 105 578**************************************************98775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	48	99	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	49	103	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-32	50	103	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	51	87	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MQEPGRRLAV PFVGVDLRRP KGYPPPAAKV EEEQARVKVN AEAPATAGDP CPRCESRDTK 60 FCYYNNYNTS QPRHFCKSCR RYWTKGGSLR NVPVGGGTRK SSSSSKSSPA APRNPKRSKN 120 SRNRRVAPAP DPAHGTDDTS IAGEVNSETK PAPLTEAAGS IAPAVEDSFK SSMSVALGLG 180 VTDVGGGGKE LPDPGQFEWP SSCGDLGSFW GTGVFADTDP SLFLNLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	124	RNPKRSKNSRNRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957110.1	3e-80	dof zinc finger protein MNB1A
Swissprot	P38564	4e-55	MNB1A_MAIZE; Dof zinc finger protein MNB1A
TrEMBL	A0A1E5V289	9e-93	A0A1E5V289_9POAL; Dof zinc finger protein MNB1A
STRING	Si030774m	1e-79	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Publications ? help Back to Top
Yanagisawa S,Izui K Molecular cloning of two DNA-binding proteins of maize that are structurally different but interact with the same sequence motif. J. Biol. Chem., 1993. 268(21): p. 16028-36 [PMID:8340424]