PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01786.1.g00220.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 265aa MW: 28496.8 Da PI: 10.4242

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01786.1.g00220.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.2	2.6e-07	77	120	2	47
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekA 47 r +h++ E+rRR++iN++ + +P + ++ sK +iL A Zmw_sc01786.1.g00220.1.sm.mkhc 77 RSKHSATEQRRRSKINDRTTVFSQKMPFP--PSILIQSKGQILGDA 120 899***********************6..27777****9776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.89E-5	66	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.7E-7	72	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.039	75	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.5E-5	77	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MAVAECAAQH IFELERSNAG HYVQLTNLYA STGMWNHVDG VRMTMRERGV SKATVRVDRK 60 GGSYSDGGTD QRPNTPRSKH SATEQRRRSK INDRTTVFSQ KMPFPPSILI QSKGQILGDA 120 LPDPFMRNGS SPEFKFTGKL DGNNNMVTLA ADSGAQDQAE TDHMANIILH SIANPSGHVH 180 LLLLNSLTQA LQSSGIDLSQ ASISVQINLG KRAVKRAAGG VSSNSKEPTE TQPSSNNRTS 240 NQLTPLGGGA EAPTHATKRH KSGNS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012699577.1	2e-90	pentatricopeptide repeat-containing protein At3g12770
TrEMBL	A0A1E5V239	2e-88	A0A1E5V239_9POAL; Pentatricopeptide repeat-containing protein
STRING	OPUNC09G12310.2	2e-76	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP72916	2	2