PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01797.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 899aa    MW: 96920.6 Da    PI: 7.9734
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01797.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65e-07794824234
                                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTT CS
                 Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkg 34 
                                     ++WT eE +ll+++++++  + W+ Ia ++  +
  Zmw_sc01797.1.g00110.1.sm.mkhc 794 DKWTDEEILLLLEGIEKYNDN-WDDIAGHLK-R 824
                                     58****************977.*******98.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.3E-5571407IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.34E-3973302IPR020683Ankyrin repeat-containing domain
SMARTSM002487.275104IPR002110Ankyrin repeat
CDDcd002041.67E-1975200No hitNo description
PROSITE profilePS5029747.00575408IPR020683Ankyrin repeat-containing domain
PfamPF127962.3E-1180170IPR020683Ankyrin repeat-containing domain
SMARTSM00248400112142IPR002110Ankyrin repeat
CDDcd002041.18E-15143264No hitNo description
SMARTSM00248170146179IPR002110Ankyrin repeat
SMARTSM00248220180209IPR002110Ankyrin repeat
PfamPF127966.6E-8218304IPR020683Ankyrin repeat-containing domain
SMARTSM00248300246275IPR002110Ankyrin repeat
SMARTSM002489.9282314IPR002110Ankyrin repeat
CDDcd002047.14E-20283408No hitNo description
SMARTSM002482100316348IPR002110Ankyrin repeat
SuperFamilySSF484035.34E-39346395IPR020683Ankyrin repeat-containing domain
PfamPF138571.6E-7346394No hitNo description
SMARTSM002480.068352381IPR002110Ankyrin repeat
PROSITE profilePS500889.805352376IPR002110Ankyrin repeat
PfamPF139623.6E-18436536IPR026961PGG domain
PROSITE profilePS5129311.218791837IPR017884SANT domain
SMARTSM007170.0014792839IPR001005SANT/Myb domain
SuperFamilySSF466891.95E-5793823IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-4794823IPR009057Homeodomain-like
CDDcd001671.56E-4795822No hitNo description
PfamPF164951.5E-10821862IPR032451SMARCC, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 899 aa     Download sequence    Send to blast
MDQQQHVQLS HPWHHGSSTT PTTQPKDADD SARLIDMCPP LYRAPPTKGG CRRSWRSFCN  60
EAYSTLYRPF QATAEGNTVL HVAAERGHDE LIREICLRFR EKKGLLSRRN SALDTPLHRA  120
ARAGRVDAVK FLERGEEGVV GCKNEAGDTA LHQAASHGHG ATVEALLVSA EATASELNAA  180
GVSPMYLAAM SGSVQAVRAI ATTRRDASAA GTGAQNALHA AVFQSAEMVN LLLEWRPALA  240
GEADRDGSTQ LHFAVSDGQR SVVRATLRAA PPRTAYRKDH AGGLSALHVA ARMGHDRVVG  300
ELLRSCPHAG ELRDDGGATF LHAAAREKRA SVVSLAVKDP TLRGLLDARD RDGNTPLHLA  360
VAAGAPRGAE TLLRKGRVRA DVLNVDGHTP FDLAEKSTSF FTMVNLVLIL VAFRAQSRLH  420
RQDHLKPWSG RDIGQGIEKT SDSLAVVAVL IATAGFQVPG GYGDDGTANL KDKPAFTIFM  480
VLIIFAAATS VVTVILLVFG KASRSNGSWK SFAMALHGFW VSLNCLMLAF YTAITVVSNI  540
SNRIAPLQAT ASLTCFPYFP VGLFRAPLAA VVLRRPQPTM PRKASKASDS RLKWRKRKRN  600
PDASPSKPSA SAAVDDHSDG SDYDEDATAA PGDGANDAAA APAGTRGSED PALDLREAEV  660
LSSVEVVSVF PSAKRRVVNR PHPSVLALLD AERSAHSGDG SATSVAPAVE NISHGQLQVL  720
SVVFPDHPSL TTDPEKPSLY VCTPPPLMEG RGVPKQFEGR LHVVPKHSDW FTPGTVHRLE  780
RQRVDGEKDG SDCDKWTDEE ILLLLEGIEK YNDNWDDIAG HLKRLELKLK QFAEVETLLL  840
KECEQVERAR QRISADCAQM RSVLSGATGT SLPGSTMPSY LFNPANEPIF DVHHVAGRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6mol_A9e-23744163449Monoextended DARPin R12 (M_R12)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980237.10.0protein ACCELERATED CELL DEATH 6 isoform X1
TrEMBLA0A3L6Q5D70.0A0A3L6Q5D7_PANMI; SWI/SNF complex subunit SWI3C-like
STRINGSi026089m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42933