PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01802.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 369aa MW: 38226.6 Da PI: 11.1576

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01802.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.4	0.00029	318	336	12	30
HHHHHHHHHHHHHCTSCCC CS HLH 12 RRdriNsafeeLrellPka 30 RR++iN ++e L+el+P + Zmw_sc01802.1.g00050.1.am.mk 318 RREKINARMELLKELVPGC 336 9****************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR01217	2.8E-10	102	114	No hit	No description
PRINTS	PR01217	2.8E-10	118	134	No hit	No description
PRINTS	PR01217	2.8E-10	189	206	No hit	No description
PRINTS	PR01217	2.8E-10	224	249	No hit	No description
CDD	cd00083	0.00174	296	336	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.4E-4	299	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MAASTGDDEM RRLLFLGAPI GSWQGSLKAA SPVTAVHHSP VAGKGRAPPR PVKKVEQPWP 60 FTFFPSLLRP SLSSLTRAAS KRKRGTPPHP APRGFYKYRH CLPPPPPPSP SPTSQTQPVP 120 ASAAPMRHTS PPPPQEFPVS GAEIQALIPA SAAGPSFSST TTASAAGGGG TRASFTALLG 180 LPTSQAMELL LPRVAPPAPA PAAAFPTNPH LVDRAAHFSA FASPAPSSPS PITTPPPPPP 240 PPAPSATNAK RKADPADRSS KGKAAKKGKT AVDENKPAGG DGEDEKPAYV HVRARRGQAT 300 DSHSLAERVS SPPLLFARRE KINARMELLK ELVPGCMHLA SPGEGMGFAS RLWLSGQNVA 360 AALKVAGDG

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MAASTGDDEM RRLLFLGAPI GSWQGSLKAA SPVTAVHHSP VAGKGRAPPR PVKKVEQPWP  60
FTFFPSLLRP SLSSLTRAAS KRKRGTPPHP APRGFYKYRH CLPPPPPPSP SPTSQTQPVP  120
ASAAPMRHTS PPPPQEFPVS GAEIQALIPA SAAGPSFSST TTASAAGGGG TRASFTALLG  180
LPTSQAMELL LPRVAPPAPA PAAAFPTNPH LVDRAAHFSA FASPAPSSPS PITTPPPPPP  240
PPAPSATNAK RKADPADRSS KGKAAKKGKT AVDENKPAGG DGEDEKPAYV HVRARRGQAT  300
DSHSLAERVS SPPLLFARRE KINARMELLK ELVPGCMHLA SPGEGMGFAS RLWLSGQNVA  360
AALKVAGDG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001347160.1	2e-54	uncharacterized protein LOC100273300
Refseq	XP_025811441.1	2e-53	transcription factor bHLH60-like
TrEMBL	A0A1D6P4V3	3e-53	A0A1D6P4V3_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRING	GRMZM2G378653_P02	5e-58	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP72931	2	2