PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01802.1.g00120.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 354aa MW: 38067.5 Da PI: 6.6656

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01802.1.g00120.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.00097	192	207	1	16
EEETTTTEEESSHHHH CS zf-C2H2 1 ykCpdCgksFsrksnL 16 ++Cp C k+Fsr n+ Zmw_sc01802.1.g00120.1.am.mk 192 FSCPVCYKTFSRYNNM 207 89*********98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.8E-4	192	208	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MGDRYTNFLR GYYPHFAPPS NPPPASSTSI FSSYATSYLH PPPPSPPIRE ALPLLSNLTP 60 PSTTTQPQHH DDVQDQKDRC KLMSLISSCS NSAGVQEAAA DQAEEVTVAL HIGLPSPSPS 120 ESAAMAAGSG AENQEPAAER QGSQQRDDGG GDEDEGEDAM VVGCASIGIG RLTKGQYWIP 180 TPSQILIGPT QFSCPVCYKT FSRYNNMQEG VPLRLLLLQY ESRGTEACSN GGRGERPLTW 240 GRTLYSYGGL THRGIQEGRS SRAELVLVQH KTVCPHPPLP RAREESHSTY TARALFLFPP 300 TPAATSARHT AASAAATSRD AMLQLQSSVF ITATKCLSSI PSLDVYLSIY RSTS

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MGDRYTNFLR GYYPHFAPPS NPPPASSTSI FSSYATSYLH PPPPSPPIRE ALPLLSNLTP  60
PSTTTQPQHH DDVQDQKDRC KLMSLISSCS NSAGVQEAAA DQAEEVTVAL HIGLPSPSPS  120
ESAAMAAGSG AENQEPAAER QGSQQRDDGG GDEDEGEDAM VVGCASIGIG RLTKGQYWIP  180
TPSQILIGPT QFSCPVCYKT FSRYNNMQEG VPLRLLLLQY ESRGTEACSN GGRGERPLTW  240
GRTLYSYGGL THRGIQEGRS SRAELVLVQH KTVCPHPPLP RAREESHSTY TARALFLFPP  300
TPAATSARHT AASAAATSRD AMLQLQSSVF ITATKCLSSI PSLDVYLSIY RSTS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002437277.1	7e-63	zinc finger protein WIP2
TrEMBL	C5Z5T1	2e-61	C5Z5T1_SORBI; Uncharacterized protein
STRING	Sb10g024040.1	3e-62	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15363	5	11