PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01803.1.g00180.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 904aa MW: 98750.5 Da PI: 10.429

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01803.1.g00180.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.7	1e-08	198	245	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq Zmw_sc01803.1.g00180.1.am.mk 198 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 245 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.67E-9	192	249	No hit	No description
SuperFamily	SSF47459	8.11E-15	192	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-14	194	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.301	194	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.4E-6	198	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-10	200	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 904 aa Download sequence Send to blast
MESRPASGDY IASLLSSSPR LDFGVLGGVS VLDGAAGRDG GDSLEKFCGD PGFAERAARL 60 SSFSGERFAG AAGLFGLPPP ALAASNGGSR ETSSVSDPAS AMRDVNAKKR KAPAPLKGKG 120 KESSSQTGEQ NDSDAKRCKT DGVEKESSPV EPKAEQAGSD ISVEDNGQKP GKGKNAKPVE 180 PPKDYVHVRA RRGQATDSHS LAERVRRERI SQRMKVLQDL VPGCNKVIGK ALMLDEIINY 240 VQSLQRQVEQ RNFWEEDLPG VFHIENGQSQ ENGVSAQSFH GYASLFYDDP SLLAGSHCSS 300 CTPNLLLLHT DDPKVLDIPT QLVYNSTAQH KALVWNGANV AASGRVFVAF LRFMCSFNRD 360 PAEKPPYFTA NFAVRFGVAL AARFLLPGKR RGNLVVFHLH SLKVKRRYYE APNFRHASKT 420 AGRRRAAFNA MPGHFPPPSL YVSASTLCCM ETRGNAGCGS GVVLDRVPPV RRSTLKYGFS 480 RPASAIGVNR RRGARTATRA VQHALHMSIS LPSFVFGSRT CRASASARTL MSHENGADRI 540 NIGHEARRVR CHDGRPTRSR PGQRSCLDGH GVVERSPSKI PSPRAGVPLL RRRRGCGPAT 600 ITATDREVDG GNESWSVYTA PTNNPSAFSC QRHCTLDLRV WPVLHATRLS HASNSVPDEE 660 DAAAISMHGR RARALGLGSR GSIPIDRRAR SRHACLMRRP TQKEEKRARK GWIQITDRTN 720 DERRWRRSIK LRELDVRFAV PVEPIRVPSS SVTACRGRIQ SDLTLSIPLP CKQEATAYRS 780 RPGAGLRRGG SPGPTPEGSI WLHIVLGDDA LLMEPQAPDL HYARNSIDLD GRVRSNRAQQ 840 LTLLVHPWSE NDTDPSMEHE QGRSPTAESV SPLGFIPHGP GGRTCSCQYT YAYGTMHTPR 900 RSCR

Sequence ? help Back to Top

Protein Sequence Length: 904 aa Download sequence Send to blast

MESRPASGDY IASLLSSSPR LDFGVLGGVS VLDGAAGRDG GDSLEKFCGD PGFAERAARL  60
SSFSGERFAG AAGLFGLPPP ALAASNGGSR ETSSVSDPAS AMRDVNAKKR KAPAPLKGKG  120
KESSSQTGEQ NDSDAKRCKT DGVEKESSPV EPKAEQAGSD ISVEDNGQKP GKGKNAKPVE  180
PPKDYVHVRA RRGQATDSHS LAERVRRERI SQRMKVLQDL VPGCNKVIGK ALMLDEIINY  240
VQSLQRQVEQ RNFWEEDLPG VFHIENGQSQ ENGVSAQSFH GYASLFYDDP SLLAGSHCSS  300
CTPNLLLLHT DDPKVLDIPT QLVYNSTAQH KALVWNGANV AASGRVFVAF LRFMCSFNRD  360
PAEKPPYFTA NFAVRFGVAL AARFLLPGKR RGNLVVFHLH SLKVKRRYYE APNFRHASKT  420
AGRRRAAFNA MPGHFPPPSL YVSASTLCCM ETRGNAGCGS GVVLDRVPPV RRSTLKYGFS  480
RPASAIGVNR RRGARTATRA VQHALHMSIS LPSFVFGSRT CRASASARTL MSHENGADRI  540
NIGHEARRVR CHDGRPTRSR PGQRSCLDGH GVVERSPSKI PSPRAGVPLL RRRRGCGPAT  600
ITATDREVDG GNESWSVYTA PTNNPSAFSC QRHCTLDLRV WPVLHATRLS HASNSVPDEE  660
DAAAISMHGR RARALGLGSR GSIPIDRRAR SRHACLMRRP TQKEEKRARK GWIQITDRTN  720
DERRWRRSIK LRELDVRFAV PVEPIRVPSS SVTACRGRIQ SDLTLSIPLP CKQEATAYRS  780
RPGAGLRRGG SPGPTPEGSI WLHIVLGDDA LLMEPQAPDL HYARNSIDLD GRVRSNRAQQ  840
LTLLVHPWSE NDTDPSMEHE QGRSPTAESV SPLGFIPHGP GGRTCSCQYT YAYGTMHTPR  900
RSCR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP35456	3	4