PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01827.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 483aa    MW: 51161.4 Da    PI: 7.8653
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01827.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1048.1e-33203261260
                                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                     +DgynWrKYGqK+vkgse+prsYY+Ct+++C++kkkvers  d++v++i+Y+g Hnh+k
  Zmw_sc01827.1.g00110.1.sm.mkhc 203 EDGYNWRKYGQKQVKGSENPRSYYKCTYHSCSMKKKVERSLADGRVTQIVYKGAHNHPK 261
                                     8********************************************************85 PP
2WRKY103.99.1e-33357415159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     ldDg++WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+ +d ++v++tYeg+Hnh+
  Zmw_sc01827.1.g00110.1.sm.mkhc 357 LDDGFRWRKYGQKVVKGNPNPRSYYKCTTPGCPVRKHVERACHDSRAVITTYEGKHNHD 415
                                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.727197262IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-28199262IPR003657WRKY domain
SuperFamilySSF1182901.57E-25201262IPR003657WRKY domain
SMARTSM007741.3E-35202261IPR003657WRKY domain
PfamPF031061.5E-24203260IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-36342417IPR003657WRKY domain
SuperFamilySSF1182903.92E-29349417IPR003657WRKY domain
PROSITE profilePS5081137.792352417IPR003657WRKY domain
SMARTSM007744.3E-38357416IPR003657WRKY domain
PfamPF031062.3E-25358415IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070370Biological Processcellular heat acclimation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MASSTGSLEH GGGGFTFTPP QFITSFTDLL SGAAGDMLSG ESPRSMFPRA GGNGGVPKFK  60
SAQPPRLPIS PPPMSPSSYF AIPAGLSPAE LLDSPVLLTS ASNFLASPTT GAIPAQRFYW  120
KQAADAIAAS QQESRADAGF SDFSFFTAGP DAVPTAQTAS FPSFTKDQQV EQSAAPKVTV  180
SSINKSGGGG GGGGDGGNNK QLEDGYNWRK YGQKQVKGSE NPRSYYKCTY HSCSMKKKVE  240
RSLADGRVTQ IVYKGAHNHP KPLSTRRNSS SGGVGGAADQ DHHHQQAAPG TEHAVATPEN  300
STVTFGDDDG CGSQRSDGDE PDAKRWKEDG ENEGSSGGKP VREPRLVVQT LSDIDILDDG  360
FRWRKYGQKV VKGNPNPRSY YKCTTPGCPV RKHVERACHD SRAVITTYEG KHNHDVPVGR  420
GAASASRAPP APAPTNHHQQ PYTLEMLPTS SDAGYGAGGA FQQRAVVAKD EPRDDLFVDS  480
LLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-36202417877Probable WRKY transcription factor 4
2lex_A4e-36202417877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00494DAPTransfer from AT5G07100Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807559.10.0WRKY transcription factor WRKY24-like
SwissprotQ6B6R41e-115WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A1E5V1I90.0A0A1E5V1I9_9POAL; Putative WRKY transcription factor 26
STRINGSi021956m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85333448
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]