PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01832.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 450aa MW: 49000.4 Da PI: 10.2206

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01832.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.2	3.8e-08	362	410	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 r+r+ eE l++++ +++Gg+ Wk +++ +++t+ q+ s+ qk++ Zmw_sc01832.1.g00080.1.am.mk 362 RDRFRVEEASLFLEGLEKYGGRgKWKEMSSKYLTTKTPSQIASHHQKHR 410 78999*****************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	9.6E-4	361	412	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-5	362	409	IPR009057	Homeodomain-like
CDD	cd00167	0.00209	364	405	No hit	No description
SuperFamily	SSF46689	1.22E-7	368	415	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MTVREEPATA AEEKGLLPTS SKADGKHTDL MTCYDSNKWA KHRTSPPPEK EAAAYVMTMG 60 EEPAPAADEK DLVPTSSKAD GKHADHMTGY AASNKKSAEH PTSPPPEWEA TAYLMTAGEE 120 AAPGAEDKHT DLMTWYASRR EIEHPNSPPP QREAAPAAEE KDSVPTSSKV GGEEPEDAAK 180 KTEPDSRKRK KPERKSAVEI SKEFGDGGGL QKTVGAVGWS GGAAVGAKPD LDGCLDLDGV 240 EVRAVRLRWR RRGEGEGEGR GGGGAAARGR RLGLWRRRGR RQGLWRRRGQ RQGLGWLRGR 300 RQXXXXCGGG AVRGRGWGGC AVGGRGWGGG EVGGRGWGGG VAAKTKAGPG QRRRRENEEP 360 PRDRFRVEEA SLFLEGLEKY GGRGKWKEMS SKYLTTKTPS QIASHHQKHR HRLEQMKRNG 420 CKRRSIHDTI TPTTSSSSRD EESESFDGSR

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MTVREEPATA AEEKGLLPTS SKADGKHTDL MTCYDSNKWA KHRTSPPPEK EAAAYVMTMG  60
EEPAPAADEK DLVPTSSKAD GKHADHMTGY AASNKKSAEH PTSPPPEWEA TAYLMTAGEE  120
AAPGAEDKHT DLMTWYASRR EIEHPNSPPP QREAAPAAEE KDSVPTSSKV GGEEPEDAAK  180
KTEPDSRKRK KPERKSAVEI SKEFGDGGGL QKTVGAVGWS GGAAVGAKPD LDGCLDLDGV  240
EVRAVRLRWR RRGEGEGEGR GGGGAAARGR RLGLWRRRGR RQGLWRRRGQ RQGLGWLRGR  300
RQXXXXCGGG AVRGRGWGGC AVGGRGWGGG EVGGRGWGGG VAAKTKAGPG QRRRRENEEP  360
PRDRFRVEEA SLFLEGLEKY GGRGKWKEMS SKYLTTKTPS QIASHHQKHR HRLEQMKRNG  420
CKRRSIHDTI TPTTSSSSRD EESESFDGSR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	190	RKRKK
2	332	339	GGRGWGGG

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP44016	2	2