PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01838.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 356aa    MW: 38796.1 Da    PI: 7.4622
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01838.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-05174193120
                                   EEETTTTEEESSHHHHHHHH CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                   ++C+ C+k+F+r  n++ H+
  Zmw_sc01838.1.g00060.1.am.mk 174 FSCTVCNKTFNRFNNMQMHM 193
                                   89*****************9 PP
2zf-C2H213.70.00018264286123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   y C  Cgk+F  + + ++H +++
  Zmw_sc01838.1.g00060.1.am.mk 264 YACRRCGKRFAVRGDWRTHEKNC 286
                                   89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.56E-5150195No hitNo description
Gene3DG3DSA:3.30.160.602.3E-5174193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.201174201IPR007087Zinc finger, C2H2
SMARTSM003550.15174196IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280176196IPR007087Zinc finger, C2H2
SMARTSM00355220227259IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.02E-6248284No hitNo description
Gene3DG3DSA:3.30.160.601.4E-6250284IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.704264284IPR007087Zinc finger, C2H2
SMARTSM0035558264284IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MHSYRAMHPY STHQYHQSHI ASVPSSKHGE DNDDDQSMLR LSLWPPGHHH GMASSPACSS  60
SPSVISSTTS MAAASYPWLN NQGHYSGGGG CGGVGSSSSH RSFLFHEQQQ EPELSISLSI  120
APPRSNAAAA CGGGFAAPAA LSSTVTTVTP GGSLVPSEYW IPSASEILVG STQFSCTVCN  180
KTFNRFNNMQ MHMWGHGSQY RKGSESLRGA ITVGTAAPAL LMRLPCYCCA EGCRNNIDHP  240
RARPLKDFRT LQTHYRRKHG ARPYACRRCG KRFAVRGDWR THEKNCGKLW FCVCGSDFKH  300
KRSLKDHVRS FGGGHAPHIV ESVAVEDDDD EDDDHEDAYQ MDDNGIAGEA TDMVVV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150708.11e-164zinc finger, C2H2 type family protein
RefseqXP_002460014.11e-164zinc finger protein WIP6
SwissprotQ9FX681e-98ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A3L6E3M81e-163A0A3L6E3M8_MAIZE; Zinc finger protein WIP6
STRINGSb02g020840.11e-163(Sorghum bicolor)
STRINGGRMZM2G150011_P011e-163(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241