PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01847.1.g00150.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 566aa MW: 60633.9 Da PI: 6.6324

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01847.1.g00150.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.5	2.9e-40	106	205	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrr+Ca++C++apyf ++p+kfa+vh++FGasnv+k+l ++p+ er da+sslvyeA+ r+rdPvyG++g i+ Zmw_sc01847.1.g00150.1.am.mk 106 PCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHRVFGASNVSKMLLEVPKPERADAASSLVYEANLRLRDPVYGCMGAIS 186 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 lqqq++ l+ael+++++e Zmw_sc01847.1.g00150.1.am.mk 187 VLQQQVNALEAELDAVRAE 205 ************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.038	105	206	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.3E-40	106	203	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence Send to blast
MQDSAVRAAN VRAFEGAETG LPSTPPPCHS SSCPSPSPKH MRACLNVHGE VCDDHRPFWE 60 RLDEIGKKIK RETDATGIAA SASTAPDENP VPRRLGLGDA LNTVTPCAAC KLLRRRCAQE 120 CPFAPYFSPH EPHKFAAVHR VFGASNVSKM LLEVPKPERA DAASSLVYEA NLRLRDPVYG 180 CMGAISVLQQ QVNALEAELD AVRAEIFKHR YRQAGAGGGA GFTGDAAQAT ASFVVPAPAV 240 HAGDVVSVAE ACQEVATPAG AQGMSPSSAV YVAEAVEQPS NTTDHYSCLN TRQGGGGGAF 300 GGVACGVCMQ LSSSYWLSSK QAKSGLVAPE SSGHETAPFP RLLVHLFIID IREEWDGEAA 360 RLGWVLLRVR GVAIGMPRDL VRNAWCSLQT TGIYRWLGCG RAPWPLTAAV LLYICTNEQL 420 AMAAARSCPM DSGLTGMDHR CPEFPASRMR CASMLSTFLT FTCFDWPTKG ADFANLEMMH 480 VVVAAARDLA RCQCSACPAR VPVNTVQQAI EAEPVYCLCT EQKAIEGQKA DTGPIRYLPD 540 ESRSEETELA EGLRHAHVTT HSPAPC

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence Send to blast

MQDSAVRAAN VRAFEGAETG LPSTPPPCHS SSCPSPSPKH MRACLNVHGE VCDDHRPFWE  60
RLDEIGKKIK RETDATGIAA SASTAPDENP VPRRLGLGDA LNTVTPCAAC KLLRRRCAQE  120
CPFAPYFSPH EPHKFAAVHR VFGASNVSKM LLEVPKPERA DAASSLVYEA NLRLRDPVYG  180
CMGAISVLQQ QVNALEAELD AVRAEIFKHR YRQAGAGGGA GFTGDAAQAT ASFVVPAPAV  240
HAGDVVSVAE ACQEVATPAG AQGMSPSSAV YVAEAVEQPS NTTDHYSCLN TRQGGGGGAF  300
GGVACGVCMQ LSSSYWLSSK QAKSGLVAPE SSGHETAPFP RLLVHLFIID IREEWDGEAA  360
RLGWVLLRVR GVAIGMPRDL VRNAWCSLQT TGIYRWLGCG RAPWPLTAAV LLYICTNEQL  420
AMAAARSCPM DSGLTGMDHR CPEFPASRMR CASMLSTFLT FTCFDWPTKG ADFANLEMMH  480
VVVAAARDLA RCQCSACPAR VPVNTVQQAI EAEPVYCLCT EQKAIEGQKA DTGPIRYLPD  540
ESRSEETELA EGLRHAHVTT HSPAPC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-39	106	209	11	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-39	106	209	11	114	LOB family transfactor Ramosa2.1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91