PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01856.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 149aa MW: 17002.6 Da PI: 7.4102

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01856.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90	1.2e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtf+kRrng+lKKA+ELS LCdaeva+iifs +g+l+e+ss Zmw_sc01856.1.g00060.1.am.mk 9 KRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	32.52	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.7E-39	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	7.07E-40	2	61	No hit	No description
SuperFamily	SSF55455	6.02E-29	2	66	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-31	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.1E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-31	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-31	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MGRGKVELKR IENKISRQVT FAKRRNGLLK KAYELSLLCD AEVALIIFSG RGRLFEFSSS 60 SWHGRELNTG KAFICLSICY CSIETISLLV LDIWRCDLIF LEPRVEELST ADLTALTRTF 120 HQQAYMDQLN NQDMAVAEHP NEHGPPGWI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	5e-19	1	62	1	62	Myocyte-specific enhancer factor 2B
1tqe_Q	5e-19	1	62	1	62	Myocyte-specific enhancer factor 2B
1tqe_R	5e-19	1	62	1	62	Myocyte-specific enhancer factor 2B
1tqe_S	5e-19	1	62	1	62	Myocyte-specific enhancer factor 2B
6c9l_A	5e-19	1	62	1	62	Myocyte-specific enhancer factor 2B
6c9l_B	5e-19	1	62	1	62	Myocyte-specific enhancer factor 2B
6c9l_C	5e-19	1	62	1	62	Myocyte-specific enhancer factor 2B
6c9l_D	5e-19	1	62	1	62	Myocyte-specific enhancer factor 2B
6c9l_E	5e-19	1	62	1	62	Myocyte-specific enhancer factor 2B
6c9l_F	5e-19	1	62	1	62	Myocyte-specific enhancer factor 2B
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794719.1	1e-35	MADS-box transcription factor 1-like
TrEMBL	A0A3B6HQL4	9e-37	A0A3B6HQL4_WHEAT; MADS-box protein
STRING	Traes_4AS_E1E60C5E5.1	2e-37	(Triticum aestivum)
STRING	GRMZM2G099522_P02	5e-37	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398