PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01857.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 221aa    MW: 23826 Da    PI: 6.753
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01857.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.28.2e-191591972159
                                     -EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY  21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                      rsYY+Ct++gCpv+k+ver+++dpk v++tYeg+Hnhe
  Zmw_sc01857.1.g00010.1.sm.mkhc 159 RRSYYKCTHNGCPVRKHVERASHDPKSVITTYEGKHNHE 197
                                     69************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007749.4E-13151198IPR003657WRKY domain
PfamPF031062.2E-14158197IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-19158199IPR003657WRKY domain
SuperFamilySSF1182903.14E-15159199IPR003657WRKY domain
PROSITE profilePS5081122.343160199IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MAAIINKSTH PDILPSPRDK SVGNGHEDEG SQDFEFKPHL NSSTQSMAPG INDAKHHDTL  60
MQNPSLNNAS SSGRHNHPKP QPNRRLTAGA VPSSQGEEKY DVATAEVKSG VSDLCNAVHS  120
AGMIEPALGP ASDDDIDAGG GRPYPGDDAN EDDDLDSKRR SYYKCTHNGC PVRKHVERAS  180
HDPKSVITTY EGKHNHEVPA SRNASHEIST APMKTTRRKG P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-161602003878Probable WRKY transcription factor 4
2lex_A2e-161602003878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695163.15e-66PREDICTED: WRKY transcription factor SUSIBA2-like
SwissprotQ6VWJ65e-62WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLA0A0E0EDN95e-66A0A0E0EDN9_9ORYZ; Uncharacterized protein
STRINGOMERI07G17160.19e-67(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67403851