PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01896.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GATA

Protein Properties

Length: 247aa MW: 27690 Da PI: 11.0159

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01896.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	22.9	1.2e-07	163	177	21	35
GATA 21 tLCnaCGlyyrkkgl 35 +LCnaCG++yrkk++ Zmw_sc01896.1.g00040.1.am.mk 163 SLCNACGIRYRKKRR 177 6***********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.50.10	3.1E-4	163	178	IPR013088	Zinc finger, NHR/GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MISFSDDDGT CRSKSEFTHK QSFHRRSETP RRLFSPPSAK APLRPHLRQN PFFRSSLSLS 60 HLPRSYSLRS LYYTLRVTEK PAGGRIKKRS SGRRSRAADR SSGATAADGV RRSQDRWDRG 120 AGGREEELRG MPRHHDAHVA ERADGTQGEF TIGLPVLLLD RASLCNACGI RYRKKRRQEL 180 GLDQKQVQQQ HQGEIKTEVK ESNSNSSSGS SNNLEVVQER KLLMGVEEAA FLLMTLSSSS 240 TSTLLHG

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6721	28	54