PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01905.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 752aa    MW: 81493.8 Da    PI: 10.0654
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01905.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.3e-18519568255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +g+W+AeIrdp+    +  r++lg++ +ae Aa+a++aa++ ++g
  Zmw_sc01905.1.g00030.1.am.mk 519 QYRGVRRRP-WGKWAAEIRDPV----KgVRVWLGTYSSAEAAARAYDAAARDIRG 568
                                   69*******.**********75....44**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.53E-17518578No hitNo description
PROSITE profilePS5103224.698519576IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-21519577IPR016177DNA-binding domain
SMARTSM003802.4E-37519582IPR001471AP2/ERF domain
PfamPF008471.6E-11519568IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-31519577IPR001471AP2/ERF domain
PRINTSPR003671.1E-9520531IPR001471AP2/ERF domain
PRINTSPR003671.1E-9542558IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MTKQSGPNAS LLSKWVTLSS GEYFREIIVI SSTGRWREAA CKWGGPRAVH RLPLCSLNYS  60
AGFSRRKKKR WECSSKKERS SATALQPHSP TAKRRINHKE SNSLEVQIDY RIAAAHRRGT  120
STVKAKKKKR KKFTRSITGR RPHSQVRDRP PLRCSPTAAV VRAGDREVCR VLRAGADGGL  180
CRRRPALAVL GEKSPVARPL ENTAFPETGG VLPVPVWHSR TAVGGESLES VGCGLWPPRM  240
GVTFPETGGG SGLAQPHSCR RRVRGVSVGC GVWPPRAMPP LARLVQVVAV SWSSRNGKAK  300
TANQTCATTS VKPACPERVL HGILLWPSPS PTMRATATDA SLPSERTRRG RQEADTLHLS  360
TEGMGRKSRS WNEAGPCPHV MSADASFLCL IPSRCDPPSS REFWSPHNQP TRKPKVETTR  420
GTNKMCGGAI LAELIPSAPA RRVKPGHLWP AAATTSNDKR QRRKADDFEA AFRDFDDDNS  480
KDDAEMAEAE EVAESKPFVF RAAPSAKRHG GGRRKPPAQY RGVRRRPWGK WAAEIRDPVK  540
GVRVWLGTYS SAEAAARAYD AAARDIRGSR AKLNFPETSC SASDSAPAGR KRARAVPAAL  600
VIDLVFDEVE EDNAASVKHE AEASQSSDES GHALLPDFSW QGVSALDFAV AQPALDVEPA  660
GAGKRMRTEE TPAERAGDEE ASPASSESDA LFDAFLFCDQ YPFFGGGGGG AYESLDSLFS  720
ADAVQGGSAA DEGMGLWSFD DACLLVEDNL SY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-19519576563ATERF1
3gcc_A4e-19519576563ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16469RRKKKR
2125130KKKKRK
3125131KKKKRKK
4127131KKRKK
5588594GRKRARA
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654