PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01921.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 233aa    MW: 25214.1 Da    PI: 9.7007
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01921.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix60.44.5e-1978158273
                      trihelix   2 WtkqevlaLiearremeerlrrg.........klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 
                                   Wt +e+l Li+a+r ++er + g         ++++++W++v ++++ +g+ rs++qC++kw+nl ++ykk+++ e + t 
  Zmw_sc01921.1.g00010.1.am.mk  78 WTLHETLILITAKRLDDERRSGGvvagspttpRSAEQRWKWVENYCWNHGCLRSQNQCNDKWDNLLRDYKKVRDYEARATH 158
                                   **************8888887553333333335******************************************999863 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.93470143IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.5E-471145IPR009057Homeodomain-like
PfamPF138372.6E-1277156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSADNVAQPA APMSGSSDPS PSSSAAAASS PLGHYRPHPH PHAHMTPPSP ASASAPAPPP  60
GPPPSPASAP RDYRKGNWTL HETLILITAK RLDDERRSGG VVAGSPTTPR SAEQRWKWVE  120
NYCWNHGCLR SQNQCNDKWD NLLRDYKKVR DYEARATHPP GSAAAEHRSY WSMERHERKD  180
RNLPTNLAPE VFDALSDVLA RRAARRGGVA IAGTPPPPLA LPPPPPPHPS PPN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448740.25e-80trihelix transcription factor ASR3
TrEMBLA0A1B6PNZ91e-78A0A1B6PNZ9_SORBI; Uncharacterized protein
STRINGSb06g032410.12e-79(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571