PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01931.1.g00120.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 511aa    MW: 55677.8 Da    PI: 9.2559
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01931.1.g00120.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.33.9e-13109147144
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAak 44 
                                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+
  Zmw_sc01931.1.g00120.1.sm.mkhc 109 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAAR 147
                                     78*******************......55**********555544 PP
2AP246.21.2e-14237287155
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     s+y+GV+ +k  grW+A+   +     +k+++lg f+t+eeAa+a+++a+ k +g
  Zmw_sc01931.1.g00120.1.sm.mkhc 237 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 287
                                     89********.7******5553..2.26**********************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-8109153IPR016177DNA-binding domain
PfamPF008471.1E-5109148IPR001471AP2/ERF domain
PROSITE profilePS5103211.258110169IPR001471AP2/ERF domain
CDDcd000185.38E-11110201No hitNo description
SMARTSM003801.4E-17110208IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-7110147IPR001471AP2/ERF domain
CDDcd000182.05E-24237297No hitNo description
PfamPF008471.2E-10237287IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-18237297IPR016177DNA-binding domain
PROSITE profilePS5103216.397238295IPR001471AP2/ERF domain
SMARTSM003805.0E-33238301IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-17238295IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MWDLNDSPAA EATTTLSPSA DDSGASSSSA AAVIDILEDA DDADAVVTRQ FFPTPPPAAA  60
AAGSTSAART GWLRLAAAPA PPTAGNVAPA VAAAAASKKS RRGPRSRSSQ YRGVTFYRRT  120
GRWESHIWDC GKQVYLGGFD TAHAAARYAA LTSICISSDL PSKFSANSSN PSNYHLCLAN  180
LRRAYDRAAI KFRGVEADIN FSLEDYQDDM KQMGNLSKEE FVHVLRRQST GFPRGSSKYR  240
GVTLHKCGRW EARMGQFLGK KYVYLGLFDT EEEAARAYDR AAIKCNGKDA ATNFDPSMYA  300
EELEPSSAAT GGDEHNLNLS LGSSAGSKRG SLDGGGDEES SDHRVLMAFD LDWQTAAARS  360
TKAKQFDQSS KQAQMPPALQ ASQHLSFNPR HHHQRWRSGD IGRPVPDDRW CGRRRRSLPS  420
PAAAAAEATA RLGQHDHLAA LPAVAEHRRR RHRYGSCSII TIPTLRYDAT SPELDRVPLP  480
DQTHLTTGLV FRSVPWRRAR RTGGQEGQFV E
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977036.11e-145AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotB8AVJ91e-143APL25_ORYSI; APETALA2-like protein 5
TrEMBLA0A0E0DJ661e-145A0A0E0DJ66_9ORYZ; Uncharacterized protein
STRINGSi012635m1e-143(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55143658
Publications ? help Back to Top
  1. Zhou Y, et al.
    Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1.
    Plant Cell, 2012. 24(3): p. 1034-48
    [PMID:22408071]