PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01935.1.g00150.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 795aa MW: 85683.7 Da PI: 9.3282

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01935.1.g00150.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.3	1.1e-12	117	165	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h ++Er+RR+++N+ ++ Lr+l+P + k+ + a+i +v+YIk+Lq Zmw_sc01935.1.g00150.1.sm.mkhc 117 SHIAVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVNYIKELQ 165 799*********************9...9******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.557	113	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-16	116	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.3E-10	117	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.63E-13	117	169	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.2E-12	117	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.9E-12	119	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0034693	Cellular Component	U11/U12 snRNP
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 795 aa Download sequence Send to blast
MAEVLCDLLF ADDDVVNGEL LQHPADADDL FGILQEWEDC VSGGSVEAAL SSAADAARPT 60 SAAAKGNKRR SPQGRCDDSV LVQEPAKKQR CSPPAVAVVA ATTGEGGATK TATTSHSHIA 120 VERNRRKQMN EHLAVLRSLM PCFYVKRGDQ ASIIGGVVNY IKELQQLLQS LEAKKQRKAY 180 ADQLVLSPRR PLPLKTTPPM SPRPAVPIIS PRTPPTSSSP YSTLRRQPSL PLLHLPLPLP 240 PPRGSSAYES PAMTPTSQES AASSSSSSSY LPSLDAIAAE LCAYTANSKQ ATASGGAVVL 300 PEVKVEFSGA NLVVKTASQR APGQAVKVIA ALEGRSSLEI LHAKISTVDD TAVNSFTIKL 360 VTRKHQGLEI CGNLGPAWRI ASFGLWAPTT SSAQREKLRS PSPAESAGRI WAVLVICIRT 420 HHADGPIEPA ADPSPLRPAP RRRLQLSTAG GRGRAAESCV RGQMSSGGMN AVFYADKYHP 480 IQAGSIDGTD IAPHDNAVLR ALICSQAGLY DPFGDPKATG DPYCTLFVGR LSRQTDDEML 540 RKDAHHSVID GSEVIVDYYR QQLMPGWIPR RLGGGLGGKK ESGQLRFGGR ERPFRAPLRP 600 IPYDELKKLG IPPPPEGRFH HHPDVKLAAT TGKIHLRGGD PGTDWMIVAT EDREVQPKMA 660 TGREAAMTDE KNHKAGLVKD HPLPGRKSGP ADREKQWEMM MVVASGGEEA ENQVKYLQRR 720 MVATEEKKLH LNLNKALIST VTTGITESRD MRADTLSTGT VGITTVMVTP REDKNQKLII 780 SILKWVAADH ETPAK

Sequence ? help Back to Top

Protein Sequence Length: 795 aa Download sequence Send to blast

MAEVLCDLLF ADDDVVNGEL LQHPADADDL FGILQEWEDC VSGGSVEAAL SSAADAARPT  60
SAAAKGNKRR SPQGRCDDSV LVQEPAKKQR CSPPAVAVVA ATTGEGGATK TATTSHSHIA  120
VERNRRKQMN EHLAVLRSLM PCFYVKRGDQ ASIIGGVVNY IKELQQLLQS LEAKKQRKAY  180
ADQLVLSPRR PLPLKTTPPM SPRPAVPIIS PRTPPTSSSP YSTLRRQPSL PLLHLPLPLP  240
PPRGSSAYES PAMTPTSQES AASSSSSSSY LPSLDAIAAE LCAYTANSKQ ATASGGAVVL  300
PEVKVEFSGA NLVVKTASQR APGQAVKVIA ALEGRSSLEI LHAKISTVDD TAVNSFTIKL  360
VTRKHQGLEI CGNLGPAWRI ASFGLWAPTT SSAQREKLRS PSPAESAGRI WAVLVICIRT  420
HHADGPIEPA ADPSPLRPAP RRRLQLSTAG GRGRAAESCV RGQMSSGGMN AVFYADKYHP  480
IQAGSIDGTD IAPHDNAVLR ALICSQAGLY DPFGDPKATG DPYCTLFVGR LSRQTDDEML  540
RKDAHHSVID GSEVIVDYYR QQLMPGWIPR RLGGGLGGKK ESGQLRFGGR ERPFRAPLRP  600
IPYDELKKLG IPPPPEGRFH HHPDVKLAAT TGKIHLRGGD PGTDWMIVAT EDREVQPKMA  660
TGREAAMTDE KNHKAGLVKD HPLPGRKSGP ADREKQWEMM MVVASGGEEA ENQVKYLQRR  720
MVATEEKKLH LNLNKALIST VTTGITESRD MRADTLSTGT VGITTVMVTP REDKNQKLII  780
SILKWVAADH ETPAK

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9657	2	2