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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zmw_sc01936.1.g00010.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family | GeBP | ||||||||
| Protein Properties | Length: 131aa MW: 14027.3 Da PI: 4.5643 | ||||||||
| Description | GeBP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF573 | 69.9 | 5e-22 | 67 | 131 | 2 | 63 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKk 63
lfqrlw++eDeiv+L+++ +f+a++g+ +++ d++ fye ++++++ ++ksqlveK+rrLK+
Zmw_sc01936.1.g00010.1.am.mk 67 LFQRLWTDEDEIVILRAFAEFTAQRGTafASHQyDTTPFYEDMRGRLQTGFTKSQLVEKLRRLKR 131
79*************************9977778******************************7 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF04504 | 1.4E-17 | 68 | 131 | IPR007592 | Protein of unknown function DUF573 |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 131 aa Download sequence Send to blast |
MVDDPSAAGA GVMISSFPDA DAYGNGDSED IDFAGDPNSH ASFSAAPATA PASAGAGGSG 60 SGERRALFQR LWTDEDEIVI LRAFAEFTAQ RGTAFASHQY DTTPFYEDMR GRLQTGFTKS 120 QLVEKLRRLK R |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | NP_001142743.1 | 2e-55 | uncharacterized protein LOC100275086 | ||||
| Swissprot | Q9CAV7 | 8e-20 | STKLJ_ARATH; Probable transcription factor At3g04930 | ||||
| TrEMBL | A0A1E5VM57 | 6e-55 | A0A1E5VM57_9POAL; Uncharacterized protein | ||||
| STRING | Pavir.Ib01769.1.p | 5e-58 | (Panicum virgatum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP974 | 37 | 123 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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