PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01965.1.g00120.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 203aa MW: 23273.3 Da PI: 8.4789

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01965.1.g00120.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.2	8.1e-18	33	77	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 gr++++E+ l++d+++++G++ W++Iar+++ gRt++++k++w++++ Zmw_sc01965.1.g00120.1.sm.mkhc 33 GRMSPQEERLIIDLHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 77 89*****************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	4.832	1	26	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.1E-9	12	39	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.0E-21	12	85	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.826	27	81	IPR017930	Myb domain
SMART	SM00717	2.5E-16	31	79	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-15	33	76	IPR001005	SANT/Myb domain
CDD	cd00167	1.42E-12	34	77	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-20	40	78	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MLHHLRVHSG LNRTGKSCRL RWVNYLHPGL KHGRMSPQEE RLIIDLHARW GNRWSRIARR 60 LPGRTDNEIK NYWRTHMRKK AQERNMRTSP SSSSSSLTYQ SCFLDATPNA GMISNGARNS 120 SSCITSTLES IQTATDGYPM EQIWNEVDAP SMLGIDEPKE NAYGTLPCPL PSAAMLDYKC 180 PEVFWKIEDD EIWMSAPQFD YGN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	8e-18	13	81	37	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	3e-17	13	81	91	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	3e-17	13	81	91	159	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	2e-17	13	81	60	128	MYB TRANSFORMING PROTEIN
1mse_C	1e-17	13	81	37	105	C-Myb DNA-Binding Domain
1msf_C	1e-17	13	81	37	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004980031.1	1e-101	myb-related protein MYBAS1
Swissprot	Q53NK6	1e-89	MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBL	K3ZJP9	1e-100	K3ZJP9_SETIT; Uncharacterized protein
STRING	Si026803m	1e-100	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP636	37	169

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]