PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01969.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 253aa MW: 26592.7 Da PI: 8.6565

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01969.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00068	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C + F ++ L H++ H Zmw_sc01969.1.g00010.1.sm.mk 78 FKCNYCVRKFYTSQALGGHQNAH 100 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.56E-6	75	105	No hit	No description
PROSITE profile	PS50157	11.219	78	105	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	80	100	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MEIEAVVEVE DREEVRGREQ APAQEMDLLG AVGSEPAANV IQALEAKGKE KAMVEVEEKP 60 VTATVAGRNG GGQKRRAFKC NYCVRKFYTS QALGGHQNAH KRERSLAKRA AAAAAGRGMY 120 DGGDPFMPPQ HLRAPHAWPY YSAGGRPSFL GLGGRGSAVP FYGVHQGWAA HEGQPSVAGV 180 ARHGGADGGQ PSAPHAYGYA ASSRMTPAPT ILDSGMAGLR WTGGVARGST GDHGVAHEVK 240 QESDGTIDLN LKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022683031.1	2e-74	zinc finger protein 3-like
TrEMBL	A0A3L6RLA4	2e-81	A0A3L6RLA4_PANMI; Uncharacterized protein
STRING	Si014969m	6e-74	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13064	22	30