PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01970.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SRS

Protein Properties

Length: 504aa MW: 52887.8 Da PI: 9.5449

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01970.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	210	6.2e-65	304	442	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkq 83 +g++sCqdCGnqakkdCah+RCRtCCksrgfdC thvkstWvpa+krrerqqqla+ a++ skr+r++ ++ Zmw_sc01970.1.g00050.1.am.mk 304 AGSISCQDCGNQAKKDCAHMRCRTCCKSRGFDCPTHVKSTWVPATKRRERQQQLATG--------AAEPSKRPRDQ---RS 373 6889***********************************************9987........56788999985...44 PP DUF702 84 salsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 sa+ +t+ ss+ +++++ +++P+evsseavfrcvr++ vd++e+e+aYqt+vsi+ hvfkGiL+d G++ Zmw_sc01970.1.g00050.1.am.mk 374 SATPTTTASSG-EQQQMVGERFPREVSSEAVFRCVRLGPVDEDEAEVAYQTTVSIADHVFKGILHDVGPD 442 45555555555.566788889*********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	7.3E-60	306	442	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.4E-27	308	350	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.8E-21	393	441	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MFLALQSGAD DFYLPIRSNQ ASKSRGLSRT TSRRSPTRSP HASKLAERRE RTETTDSSAG 60 GVRVYHAPLC ARRRPSPAAA PKPPARLGRL DLYASKDVEH DRGYAFRGSL AAWQGPSSLS 120 SPSPSSLTPP HHIKVEATSA QLPAYLPPPL PPPPYSRTEL LVVAHGDAIC LLSSGSRIRV 180 HSPATRYTGD PASDPPLPGG AYGSGRMAGF PLGGGGGHGR GYNHPPINPS SGAESSAAAA 240 AAAAYLYTTA TAPPRGGGFQ LWPQHHHPFQ EHSFYASNII RFADDPAAGS SSSSRGGRGS 300 GLGAGSISCQ DCGNQAKKDC AHMRCRTCCK SRGFDCPTHV KSTWVPATKR RERQQQLATG 360 AAEPSKRPRD QRSSATPTTT ASSGEQQQMV GERFPREVSS EAVFRCVRLG PVDEDEAEVA 420 YQTTVSIADH VFKGILHDVG PDPSVAGGGM MIRHAAEGSS PSTVAAGEGS VSATAPGSSS 480 AVVMDPYPTP GPYGGSSFFH GHPR

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MFLALQSGAD DFYLPIRSNQ ASKSRGLSRT TSRRSPTRSP HASKLAERRE RTETTDSSAG  60
GVRVYHAPLC ARRRPSPAAA PKPPARLGRL DLYASKDVEH DRGYAFRGSL AAWQGPSSLS  120
SPSPSSLTPP HHIKVEATSA QLPAYLPPPL PPPPYSRTEL LVVAHGDAIC LLSSGSRIRV  180
HSPATRYTGD PASDPPLPGG AYGSGRMAGF PLGGGGGHGR GYNHPPINPS SGAESSAAAA  240
AAAAYLYTTA TAPPRGGGFQ LWPQHHHPFQ EHSFYASNII RFADDPAAGS SSSSRGGRGS  300
GLGAGSISCQ DCGNQAKKDC AHMRCRTCCK SRGFDCPTHV KSTWVPATKR RERQQQLATG  360
AAEPSKRPRD QRSSATPTTT ASSGEQQQMV GERFPREVSS EAVFRCVRLG PVDEDEAEVA  420
YQTTVSIADH VFKGILHDVG PDPSVAGGGM MIRHAAEGSS PSTVAAGEGS VSATAPGSSS  480
AVVMDPYPTP GPYGGSSFFH GHPR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821984.1	1e-125	protein SHI RELATED SEQUENCE 1-like
TrEMBL	A0A3L6PPK2	1e-130	A0A3L6PPK2_PANMI; Protein SHI RELATED SEQUENCE 1-like
STRING	Si015301m	1e-123	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124