PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01976.1.g00160.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 568aa    MW: 61435.7 Da    PI: 7.2215
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01976.1.g00160.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.94.5e-103453821954
                                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                     Fe   ++yp+  +++ LAk++gLt +qV++WF N R +
  Zmw_sc01976.1.g00160.1.sm.mkhc 345 FEHflHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 382
                                     664459******************************88 PP
2BELL83.33e-27212280472
                            BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                     e + +k++Lls+++eV+krY+qy+ q+ +v +sFe+vag  +a+p++++Al+a++ hF+cLk +i +q+
  Zmw_sc01976.1.g00160.1.sm.mkhc 212 EQEGRKTRLLSMMDEVCKRYRQYHRQVLAVTASFETVAGFSNAAPFAAMALRAMALHFKCLKSMIQSQL 280
                                     7788**************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.0E-30141278IPR006563POX domain
PfamPF075269.2E-34146276IPR006563POX domain
PROSITE profilePS5007112.293323386IPR001356Homeobox domain
CDDcd000866.86E-14326387No hitNo description
SMARTSM003892.4E-11326390IPR001356Homeobox domain
SuperFamilySSF466891.71E-17327394IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.8E-29329390IPR009057Homeodomain-like
PfamPF059205.9E-19343382IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MSYGGGAEHH CHGPGELLLH HHSQHVAGQL YHVPQHSRRE KLRFPAPDAA ADSPPHAQQH  60
GAWLPTPPPH LPPAFYSYAS SSTTSSYSPH SPTLAQAQLV SHGGVAATQL TQNFALSLSS  120
SSSNPPPTPR RQLAGPYGPF TGYAAVLARS RFLAPAEKLL QEICDVGGLA ANVDRSVSDE  180
GLLDADPMEA IDHDMDGGDC AASDAGPMSG SEQEGRKTRL LSMMDEVCKR YRQYHRQVLA  240
VTASFETVAG FSNAAPFAAM ALRAMALHFK CLKSMIQSQL RNTTKVAVVN ERLSKDITMF  300
GLTGGGASAL ERASTVTAFG QPHNIWRPQR GLPEHAVSVL RAWLFEHFLH PYPTDGDKQM  360
LAKQTGLTRN QVSNWFINAR VRLWKPMVEE IHNLEMRQAH KHPASDKSQH GVHYHTQHSS  420
ECSGKPSDPS DSQLAQSSSI TRNHDIPASH GFADELSQVS PSIHGQISFP YNGVATVHQH  480
SVAPSQHQHV GGGFDGAGNG GVSLTLGLHQ NHKVCIAEPL PAYLPPNLAH RFGLEDVSDT  540
AYVMATFGGQ DRHIAKEIID GHLSGQDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A8e-17332390563Homeobox protein Meis2
4xrm_B8e-17332390563Homeobox protein Meis2
4xrs_A9e-17332389158Homeobox protein Meis1
4xrs_B9e-17332389158Homeobox protein Meis1
5bng_A9e-17332390159Homeobox protein Meis2
5bng_B9e-17332390159Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970574.10.0BEL1-like homeodomain protein 9
TrEMBLK3XFT40.0K3XFT4_SETIT; Uncharacterized protein
STRINGSi000753m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881