PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01982.1.g00170.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 672aa    MW: 72721.9 Da    PI: 8.3269
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01982.1.g00170.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.49.3e-17287333455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY++sLq
  Zmw_sc01982.1.g00170.1.am.mk 287 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLRSLQ 333
                                   6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.0E-20280340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.27E-18280337No hitNo description
SuperFamilySSF474592.09E-20281343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.47283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-14287333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-18289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MNQFVHDWAS SMGDAFAPLG FVPVIYGGLF LDDSCVIPFG SWLTSCESAM RFYSVEDDGL  60
MELLWCNGHV VMQSQAPRKP PRSDKEEAVQ GNEAEAWFQC PIEDPLERDL FSELFGETPA  120
DVPSRAACKE EEDCAAVTAP QLSRPNKACL EEIAGVSNCA VGKPDAGGDG EAATETGESS  180
MLTIGSSFCG SNHVQTTPRV VPLTPPRGGK AGARARDKRK QRDVAETEVR RTRAAGVFLP  240
RKRSITRPYR NNDTAAALQD VEFESAVVTC EPAQKLKTAK RRRAAEVHNL SERRRRDRIN  300
EKMKALQELI PHCNKTDKAS MLDEAIEYLR SLQLQLQVMW MGGGMATAAP VMFPAGVHQY  360
MQRMVGPPHV AAMPRLPPFM APPAVQSPPV GQMPVADPYA GCLAVDSLQT PGPMHYLQGV  420
NFYQRQSPAP PPPPVVPGGS LPAATALTLP SDNTLHKEHG MQCNSPATKQ NLDHFTRERS  480
LAIAIANHPF RQLVIRQLWS LRSFGCVELM DGAPYRRLEI RTPVPSASVP AAPFGTCWQT  540
RVPVSTLKKP GNGRSEQKGA AVTLSSHLCR PMSCRPGPRA PAPAAPSRAK TRARALPATT  600
SPWGMAMAAE RWTTAARVPA ADDDEAPGGT HCVGGGGDRC LSAVRNSSSS SSVRSITILA  660
LQISFQQQEK GQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212220ARARDKRKQ
2215221RDKRKQR
3275281LKTAKRR
4280295RRRAAEVHNLSERRRR
5291296ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963135.11e-131transcription factor PIF4 isoform X1
RefseqXP_004963136.11e-131transcription factor PIF4 isoform X1
RefseqXP_022680515.11e-131transcription factor PIF4 isoform X1
TrEMBLK3Z6M71e-130K3Z6M7_SETIT; Uncharacterized protein
STRINGSi022196m1e-131(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677