PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01994.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Nin-like

Protein Properties

Length: 236aa MW: 25253.9 Da PI: 6.5493

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01994.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	38.9	1.7e-12	1	25	26	50
RWP-RK 26 gvclTvLKriCRqyGIkRWPhRkik 50 gv++ vLKriCR +GI RWP+Rk+ Zmw_sc01994.1.g00030.1.es.mkhc 1 GVGTGVLKRICRTHGIVRWPYRKLV 25 79*********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	11.308	1	47	IPR003035	RWP-RK domain
Pfam	PF02042	7.2E-10	1	25	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
GVGTGVLKRI CRTHGIVRWP YRKLVSGKAG DDTKNSEREK AKELDTAAKQ KASSSSAMSS 60 ITSQAAGKSQ QGVSKAGGQI SPLGNQITSG GLALVSQTKG IPTFMDDFKF GFPSSGLSHE 120 TTKWWGASSD TDSAASAKDA TDESATQDAL KGMTDDDELD WGADEGEGEA DGSVTAEPSA 180 RLCSLRRKAV DDGRELLNDY TYGGRQEFSR LNKRQKLVLA QVFGAWLPQE WRSQLV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967322.2	2e-99	uncharacterized protein LOC101771632
TrEMBL	A0A0A9PF78	1e-100	A0A0A9PF78_ARUDO; Uncharacterized protein
STRING	Si002505m	3e-99	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6705	32	42