PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02003.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 261aa    MW: 28097.1 Da    PI: 4.693
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02003.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY40.36.2e-131141551959
                                   SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY  19 efprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   +  r+YY+C+s   C ++k ver+ e p+v++itY  eH h 
  Zmw_sc02003.1.g00040.1.am.mk 114 PKRRGYYKCSSLkACLARKSVERNPEKPEVLTITYIAEHCHA 155
                                   4569******9989*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-12113157IPR003657WRKY domain
SuperFamilySSF1182902.35E-10114157IPR003657WRKY domain
PfamPF031063.5E-10114154IPR003657WRKY domain
PROSITE profilePS5081115.858114157IPR003657WRKY domain
SMARTSM007742.9E-6114156IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEPLNDWDLQ AVVRSCGTAA CSSSSAAVES LHKEAARSMV EAGSESFLGQ PAATLRDLDS  60
LNLDHELPFS ITPASDGRAN DGQEVLISSP AESASGQSRK KAGRRKPGVR APRPKRRGYY  120
KCSSLKACLA RKSVERNPEK PEVLTITYIA EHCHAVPTML NSVAGTTRNR PPSPVPDRRS  180
QSDEPSATNN RREDSADASS ITADGGSAGT PDDENVDLWP VDMSLLDEYP LDDLLGPFAD  240
GVDLCLEDVD ERDGFGRRMS L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809273.11e-74WRKY transcription factor 22-like
TrEMBLA0A3L6SXR15e-84A0A3L6SXR1_PANMI; WRKY transcription factor 22-like
STRINGPavir.J29891.1.p9e-75(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070